Information for 5-GKAAWTACTGSMG (Motif 7)

A C T G A C G T C G T A C G T A G C A T A G C T G T C A A T G C C A G T A C T G A T G C G T C A C T A G
Reverse Opposite:
G A T C A C G T T A C G G T A C G T C A A T C G C A G T C T G A C G T A C G A T G C A T T G C A A G T C
p-value:1e-10
log p-value:-2.306e+01
Information Content per bp:1.640
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif9.03%
Number of Background Sequences with motif348.1
Percentage of Background Sequences with motif0.75%
Average Position of motif in Targets52.2 +/- 27.6bp
Average Position of motif in Background51.4 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0062.1_Hoxb7/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GKAAWTACTGSMG
GTAGTAATTAATGCAA
 A C G T A C G T A C G T A C T G A C G T C G T A C G T A G C A T A G C T G T C A A T G C C A G T A C T G A T G C G T C A C T A G
A T C G A G C T T G C A A C T G G A C T G T C A G C T A C G A T C A G T C T G A T G C A A C G T C A T G A T G C G C T A C T G A

PH0039.1_Mnx1/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GKAAWTACTGSMG
GTACTAATTAGTGGCG
 A C G T A C G T A C G T A C T G A C G T C G T A C G T A G C A T A G C T G T C A A T G C C A G T A C T G A T G C G T C A C T A G
A C T G A C G T T G C A A T G C G A C T G T C A C G T A G A C T A C G T C T G A A T C G A C G T C T A G T A C G G A T C T A C G

PH0055.1_Hoxa7_2/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GKAAWTACTGSMG
GTAGTAATTAATGGAA
 A C G T A C G T A C G T A C T G A C G T C G T A C G T A G C A T A G C T G T C A A T G C C A G T A C T G A T G C G T C A C T A G
A C T G A C G T T G C A A C T G G C A T G T C A C G T A A C G T C A G T C G T A T G C A A C G T T C A G A T C G G T C A T G C A

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:4
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GKAAWTACTGSMG
--ATTTCCTGTN-
 A C T G A C G T C G T A C G T A G C A T A G C T G T C A A T G C C A G T A C T G A T G C G T C A C T A G
A C G T A C G T T C G A A G C T A C G T A C G T A G T C A G T C A C G T A T C G G A C T A T C G A C G T

PH0061.1_Hoxb6/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GKAAWTACTGSMG
TATTGGTAATTACCTT--
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T C G T A C G T A G C A T A G C T G T C A A T G C C A G T A C T G A T G C G T C A C T A G
G C A T G C T A C A G T C A G T A T C G A C T G A G C T G T C A C G T A C G A T C A G T C T G A G T A C T A G C C A G T A G C T A C G T A C G T

PH0072.1_Hoxc8/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GKAAWTACTGSMG
TTGGGGTAATTAACGT--
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T C G T A C G T A G C A T A G C T G T C A A T G C C A G T A C T G A T G C G T C A C T A G
A C G T G C A T C A T G C T A G C T A G C A T G G A C T G T C A G C T A C A G T C A G T C T G A G T C A A G T C C A T G A C G T A C G T A C G T

PH0103.1_Meox1/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GKAAWTACTGSMG
GAGGTAATTACCTCAG
 A C G T A C G T A C G T A C T G A C G T C G T A C G T A G C A T A G C T G T C A A T G C C A G T A C T G A T G C G T C A C T A G
T C A G T G C A C A T G C A T G G A C T T G C A G C T A C A G T A C G T C T G A A T G C G T A C G A C T A G T C C G T A C T A G

PH0053.1_Hoxa6/Jaspar

Match Rank:8
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GKAAWTACTGSMG
NTNAGGTAATTACCTT--
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T C G T A C G T A G C A T A G C T G T C A A T G C C A G T A C T G A T G C G T C A C T A G
G T C A C G A T C A G T C T G A C T A G A C T G G A C T G T C A G C T A C A G T C A G T C T G A G T A C G A T C C A G T A G C T A C G T A C G T

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GKAAWTACTGSMG
--ATTTCCTGTN-
 A C T G A C G T C G T A C G T A G C A T A G C T G T C A A T G C C A G T A C T G A T G C G T C A C T A G
A C G T A C G T C T G A A G C T A C G T A C G T A G T C A G T C A C G T A C T G G A C T A C G T A C G T

HOXA5/MA0158.1/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GKAAWTACTGSMG
--AATTAGTG---
 A C T G A C G T C G T A C G T A G C A T A G C T G T C A A T G C C A G T A C T G A T G C G T C A C T A G
A C G T A C G T T G C A C G T A A G C T C G A T G C T A T A C G G A C T A C T G A C G T A C G T A C G T