Information for 3-CAATAAAACT (Motif 4)

A G T C G C T A C T G A C A G T C G T A C G T A G T C A C T G A A T G C A C G T
Reverse Opposite:
T G C A T A C G G A C T A C G T C G A T G C A T G T C A G A C T C G A T C T A G
p-value:1e-14
log p-value:-3.412e+01
Information Content per bp:1.706
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif17.36%
Number of Background Sequences with motif1015.8
Percentage of Background Sequences with motif2.18%
Average Position of motif in Targets50.3 +/- 28.7bp
Average Position of motif in Background49.9 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13/MA0901.1/Jaspar

Match Rank:1
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-CAATAAAACT
CCAATAAAAC-
 A C G T A G T C G C T A C T G A C A G T C G T A C G T A G T C A C T G A A T G C A C G T
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:2
Score:0.92
Offset:-4
Orientation:forward strand
Alignment:----CAATAAAACT--
CTACCAATAAAATTCT
 A C G T A C G T A C G T A C G T A G T C G C T A C T G A C A G T C G T A C G T A G T C A C T G A A T G C A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

HOXA13/MA0650.1/Jaspar

Match Rank:3
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-CAATAAAACT
CCAATAAAAA-
 A C G T A G T C G C T A C T G A C A G T C G T A C G T A G T C A C T G A A T G C A C G T
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-CAATAAAACT
CCAATAAAAA-
 A C G T A G T C G C T A C T G A C A G T C G T A C G T A G T C A C T G A A T G C A C G T
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:5
Score:0.88
Offset:-4
Orientation:forward strand
Alignment:----CAATAAAACT---
AATGCAATAAAATTTAT
 A C G T A C G T A C G T A C G T A G T C G C T A C T G A C A G T C G T A C G T A G T C A C T G A A T G C A C G T A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--CAATAAAACT
NCYAATAAAA--
 A C G T A C G T A G T C G C T A C T G A C A G T C G T A C G T A G T C A C T G A A T G C A C G T
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-CAATAAAACT
GCAATAAAA--
 A C G T A G T C G C T A C T G A C A G T C G T A C G T A G T C A C T G A A T G C A C G T
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:8
Score:0.88
Offset:-4
Orientation:forward strand
Alignment:----CAATAAAACT--
AACCCAATAAAATTCG
 A C G T A C G T A C G T A C G T A G T C G C T A C T G A C A G T C G T A C G T A G T C A C T G A A T G C A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:9
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--CAATAAAACT
NGCAATTAAA--
 A C G T A C G T A G T C G C T A C T G A C A G T C G T A C G T A G T C A C T G A A T G C A C G T
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:10
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--CAATAAAACT
GGTAATAAAAA-
 A C G T A C G T A G T C G C T A C T G A C A G T C G T A C G T A G T C A C T G A A T G C A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T