Information for 1-CGCTCTAGCC (Motif 1)

A G T C A C T G A G T C A C G T A G T C A C G T C T G A A C T G A T G C T A G C
Reverse Opposite:
A T C G T A C G A G T C A G C T C G T A A C T G C G T A A C T G T G A C A C T G
p-value:1e-34
log p-value:-7.952e+01
Information Content per bp:1.904
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif20.83%
Number of Background Sequences with motif314.6
Percentage of Background Sequences with motif0.68%
Average Position of motif in Targets57.9 +/- 23.9bp
Average Position of motif in Background49.9 +/- 36.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CGCTCTAGCC--
GGCTCYAKCAYC
 A G T C A C T G A G T C A C G T A G T C A C G T C T G A A C T G A T G C T A G C A C G T A C G T
C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C

ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CGCTCTAGCC--
BCNGGTTCTAGANCN
 A C G T A C G T A C G T A G T C A C T G A G T C A C G T A G T C A C G T C T G A A C T G A T G C T A G C A C G T A C G T
A G C T T G A C C T A G C A T G C T A G G A C T A C G T A G T C A G C T C T G A T A C G T C G A C G A T A G T C G A C T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CGCTCTAGCC
AGCCACTCAAG--
 A C G T A C G T A C G T A G T C A C T G A G T C A C G T A G T C A C G T C T G A A C T G A T G C T A G C
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:4
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CGCTCTAGCC
NSCACTYVAV--
 A C G T A C G T A G T C A C T G A G T C A C G T A G T C A C G T C T G A A C T G A T G C T A G C
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CGCTCTAGCC-
-TGTCTAGACG
 A G T C A C T G A G T C A C G T A G T C A C G T C T G A A C T G A T G C T A G C A C G T
A C G T C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CGCTCTAGCC
RSCACTYRAG--
 A C G T A C G T A G T C A C T G A G T C A C G T A G T C A C G T C T G A A C T G A T G C T A G C
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T

PB0090.1_Zbtb12_1/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CGCTCTAGCC---
CTAAGGTTCTAGATCAC
 A C G T A C G T A C G T A C G T A G T C A C T G A G T C A C G T A G T C A C G T C T G A A C T G A T G C T A G C A C G T A C G T A C G T
A T G C A C G T G C T A T C G A A C T G C T A G C G A T C G A T A G T C A G C T T C G A C T A G T C G A G C A T A G T C T G C A A G T C

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CGCTCTAGCC
NGCTN-----
 A G T C A C T G A G T C A C G T A G T C A C G T C T G A A C T G A T G C T A G C
T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CGCTCTAGCC
AASCACTCAA---
 A C G T A C G T A C G T A G T C A C T G A G T C A C G T A G T C A C G T C T G A A C T G A T G C T A G C
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CGCTCTAGCC
AGGTCTCTAACC
 A C G T A C G T A G T C A C T G A G T C A C G T A G T C A C G T C T G A A C T G A T G C T A G C
C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C