Information for 2-CCGCCATCTTGCS (Motif 3)

A T G C G A T C C T A G A T G C T A G C G T C A G A C T A T G C G A C T A C G T T A C G G A T C A T C G
Reverse Opposite:
T A G C C T A G A T G C T G C A C T G A T A C G C T G A C A G T A T C G T A C G G A T C C T A G T A C G
p-value:1e-13
log p-value:-3.030e+01
Information Content per bp:1.552
Number of Target Sequences with motif65.0
Percentage of Target Sequences with motif7.29%
Number of Background Sequences with motif1177.8
Percentage of Background Sequences with motif2.51%
Average Position of motif in Targets51.6 +/- 26.8bp
Average Position of motif in Background50.0 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1(Zf)/Promoter/Homer

Match Rank:1
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-CCGCCATCTTGCS
GCCGCCATCTTG--
 A C G T A T G C G A T C C T A G A T G C T A G C G T C A G A C T A T G C G A C T A C G T T A C G G A T C A T C G
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:2
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-CCGCCATCTTGCS
GCNGCCATCTTG--
 A C G T A T G C G A T C C T A G A T G C T A G C G T C A G A C T A T G C G A C T A C G T T A C G G A T C A T C G
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CCGCCATCTTGCS
GTCCGCCATTA----
 A C G T A C G T A T G C G A T C C T A G A T G C T A G C G T C A G A C T A T G C G A C T A C G T T A C G G A T C A T C G
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CCGCCATCTTGCS
--GCCATCTGTT-
 A T G C G A T C C T A G A T G C T A G C G T C A G A C T A T G C G A C T A C G T T A C G G A T C A T C G
A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CCGCCATCTTGCS--
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A T G C G A T C C T A G A T G C T A G C G T C A G A C T A T G C G A C T A C G T T A C G G A T C A T C G A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CCGCCATCTTGCS----
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A T G C G A T C C T A G A T G C T A G C G T C A G A C T A T G C G A C T A C G T T A C G G A T C A T C G A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CCGCCATCTTGCS--
CCNNACCATCTGGCCTN
 A C G T A C G T A T G C G A T C C T A G A T G C T A G C G T C A G A C T A T G C G A C T A C G T T A C G G A T C A T C G A C G T A C G T
A G T C T A G C T A C G C T A G T C G A G T A C A G T C C G T A A G C T T G A C A G C T C A T G A T C G G T A C G A T C A G C T C A G T

CTCF/MA0139.1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CCGCCATCTTGCS----
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A T G C G A T C C T A G A T G C T A G C G T C A G A C T A T G C G A C T A C G T T A C G G A T C A T C G A C G T A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

SP2/MA0516.1/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCGCCATCTTGCS
GCCCCGCCCCCTCCC-
 A C G T A C G T A C G T A T G C G A T C C T A G A T G C T A G C G T C A G A C T A T G C G A C T A C G T T A C G G A T C A T C G
A T C G A G T C G A T C A T G C A G T C C A T G A G T C A G T C A G T C G A T C G A T C A G C T A T G C A T G C A T G C A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:10
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CCGCCATCTTGCS
TACGCCCCGCCACTCTG--
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C T A G A T G C T A G C G T C A G A C T A T G C G A C T A C G T T A C G G A T C A T C G
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G A C G T A C G T