Information for 16-GGCCATGATTTAT (Motif 21)

A C T G A T C G G A T C A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C G T C G T A C G A T
Reverse Opposite:
C G T A A C G T C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C T G C A T G A T G C G T A C
p-value:1e-8
log p-value:-1.964e+01
Information Content per bp:1.929
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets22.4 +/- 12.6bp
Average Position of motif in Background52.6 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.73
Offset:4
Orientation:reverse strand
Alignment:GGCCATGATTTAT----
----NTGATTTATGGCC
 A C T G A T C G G A T C A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C G T C G T A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxa9/MA0594.1/Jaspar

Match Rank:2
Score:0.72
Offset:5
Orientation:reverse strand
Alignment:GGCCATGATTTAT---
-----TGATTTATGGC
 A C T G A T C G G A T C A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C G T C G T A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.72
Offset:5
Orientation:reverse strand
Alignment:GGCCATGATTTAT----
-----TGATTTATGGCC
 A C T G A T C G G A T C A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C G T C G T A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.70
Offset:5
Orientation:reverse strand
Alignment:GGCCATGATTTAT----
-----TGATTTATGGCC
 A C T G A T C G G A T C A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C G T C G T A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:5
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:GGCCATGATTTAT--
-----TGATTGATGA
 A C T G A T C G G A T C A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C G T C G T A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

PH0037.1_Hdx/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GGCCATGATTTAT----
TNNNATGATTTCNNCNN
 A C T G A T C G G A T C A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C G T C G T A C G A T A C G T A C G T A C G T A C G T
A C G T C A T G T A G C C T A G C T G A C G A T A T C G G T C A G C A T G C A T A C G T G A T C C A T G G T A C T G A C G A C T G C A T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:7
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:GGCCATGATTTAT---
----ATGATKGATGRC
 A C T G A T C G G A T C A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C G T C G T A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GGCCATGATTTAT
-GCAGTGATTT--
 A C T G A T C G G A T C A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C G T C G T A C G A T
A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T A C G T A C G T

Gfi1b/MA0483.1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GGCCATGATTTAT
TGCTGTGATTT--
 A C T G A T C G G A T C A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C G T C G T A C G A T
C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GGCCATGATTTAT
--CNGTGATTTN-
 A C T G A T C G G A T C A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C G T C G T A C G A T
A C G T A C G T A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G A C G T