Information for 3-GCTAATAACAATA (Motif 9)

A C T G A G T C A C G T C G T A C G T A A C G T C G T A C G T A A G T C C G T A C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A A C G T A C G T C T A G A C G T A C G T C G T A A C G T C G A T C G T A C T A G A G T C
p-value:1e-11
log p-value:-2.600e+01
Information Content per bp:1.924
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.2 +/- 16.5bp
Average Position of motif in Background26.1 +/- 6.9bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0062.1_Sox12_1/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GCTAATAACAATA-
NTTNAGAACAATTA
 A C T G A G T C A C G T C G T A C G T A A C G T C G T A C G T A A G T C C G T A C G T A A C G T C G T A A C G T
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A

PB0064.1_Sox14_1/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GCTAATAACAATA---
GCTAATTATAATTATC
 A C T G A G T C A C G T C G T A C G T A A C G T C G T A C G T A A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C G T
C A T G G A T C G A C T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C A G T G T A C

PB0067.1_Sox18_1/Jaspar

Match Rank:3
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GCTAATAACAATA---
NNTNANAACAATTNNA
 A C T G A G T C A C G T C G T A C G T A A C G T C G T A C G T A A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C G T
C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A

PB0074.1_Sox8_1/Jaspar

Match Rank:4
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GCTAATAACAATA-----
-TNNAGAACAATANATNN
 A C T G A G T C A C G T C G T A C G T A A C G T C G T A C G T A A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C

PB0063.1_Sox13_1/Jaspar

Match Rank:5
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GCTAATAACAATA----
-TTAAGAACAATAAATT
 A C T G A G T C A C G T C G T A C G T A A C G T C G T A C G T A A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C G T A C G T
A C G T C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T

Sox5/MA0087.1/Jaspar

Match Rank:6
Score:0.70
Offset:5
Orientation:reverse strand
Alignment:GCTAATAACAATA
-----NAACAAT-
 A C T G A G T C A C G T C G T A C G T A A C G T C G T A C G T A A G T C C G T A C G T A A C G T C G T A
A C G T A C G T A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T

PB0072.1_Sox5_1/Jaspar

Match Rank:7
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GCTAATAACAATA----
-TTTAGAACAATAAAAT
 A C T G A G T C A C G T C G T A C G T A A C G T C G T A C G T A A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C G T A C G T
A C G T C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

PB0122.1_Foxk1_2/Jaspar

Match Rank:8
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GCTAATAACAATA---
-CAAACAACAACACCT
 A C T G A G T C A C G T C G T A C G T A A C G T C G T A C G T A A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C G T
A C G T G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T

PB0119.1_Foxa2_2/Jaspar

Match Rank:9
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GCTAATAACAATA--
AAAAATAACAAACGG
 A C T G A G T C A C G T C G T A C G T A A C G T C G T A C G T A A G T C C G T A C G T A A C G T C G T A A C G T A C G T
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

PB0073.1_Sox7_1/Jaspar

Match Rank:10
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GCTAATAACAATA--------
AATAAAGAACAATAGAATTTCA
 A C G T A C T G A G T C A C G T C G T A C G T A A C G T C G T A C G T A A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T C A G C T A A C G T C T G A G C T A C G T A C T A G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C T A G A C T G C A T G C A T A G T C G C T A