Information for 17-AGATTTAGAGCAGATT (Motif 35)

C G T A A C T G C G T A A C G T A C G T A C G T C G T A A C T G C G T A A C T G A G T C C G T A A C T G C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T A G T C A C G T A C T G A G T C A C G T A G T C A C G T C G T A C G T A C G T A A C G T A G T C A C G T
p-value:1e-7
log p-value:-1.739e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.0 +/- 17.3bp
Average Position of motif in Background43.9 +/- 17.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AGATTTAGAGCAGATT
NTGATTTATGGCC----
 A C G T C G T A A C T G C G T A A C G T A C G T A C G T C G T A A C T G C G T A A C T G A G T C C G T A A C T G C G T A A C G T A C G T
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T A C G T A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGATTTAGAGCAGATT
TGATTTATGGCC----
 C G T A A C T G C G T A A C G T A C G T A C G T C G T A A C T G C G T A A C T G A G T C C G T A A C T G C G T A A C G T A C G T
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T A C G T A C G T A C G T

Rhox11/MA0629.1/Jaspar

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AGATTTAGAGCAGATT
TCNNTTTACAGCGNNNT
 A C G T C G T A A C T G C G T A A C G T A C G T A C G T C G T A A C T G C G T A A C T G A G T C C G T A A C T G C G T A A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0157.1_Rhox11_1/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AGATTTAGAGCAGATT
TCNNTTTACAGCGNNNT
 A C G T C G T A A C T G C G T A A C G T A C G T A C G T C G T A A C T G C G T A A C T G A G T C C G T A A C T G C G T A A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AGATTTAGAGCAGATT
TGACANARRCCAGRC-
 C G T A A C T G C G T A A C G T A C G T A C G T C G T A A C T G C G T A A C T G A G T C C G T A A C T G C G T A A C G T A C G T
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AGATTTAGAGCAGATT
TGATTTATGGCC----
 C G T A A C T G C G T A A C G T A C G T A C G T C G T A A C T G C G T A A C T G A G T C C G T A A C T G C G T A A C G T A C G T
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C A C G T A C G T A C G T A C G T

ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AGATTTAGAGCAGATT
AGAGRRACAGCWGAC-
 C G T A A C T G C G T A A C G T A C G T A C G T C G T A A C T G C G T A A C T G A G T C C G T A A C T G C G T A A C G T A C G T
T C G A C T A G C G T A C T A G C T G A T C A G C G T A A G T C C G T A T C A G T G A C G C A T A C T G C G T A A G T C A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-AGATTTAGAGCAGATT
TCNCTTTACAGCGNNNT
 A C G T C G T A A C T G C G T A A C G T A C G T A C G T C G T A A C T G C G T A A C T G A G T C C G T A A C T G C G T A A C G T A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AGATTTAGAGCAGATT-
YTAATTRAWWCCAGATGT
 A C G T C G T A A C T G C G T A A C G T A C G T A C G T C G T A A C T G C G T A A C T G A G T C C G T A A C T G C G T A A C G T A C G T A C G T
G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:AGATTTAGAGCAGATT
TGATTTATGGC-----
 C G T A A C T G C G T A A C G T A C G T A C G T C G T A A C T G C G T A A C T G A G T C C G T A A C T G C G T A A C G T A C G T
C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C A C G T A C G T A C G T A C G T A C G T