Information for 12-TNTAAAATTAACACAG (Motif 29)

A G C T A G T C A C G T C G T A G T C A C G T A C G T A A C G T A C G T C G T A C G T A G T A C G T C A G T A C C G T A A T C G
Reverse Opposite:
A T G C A C G T A C T G A C G T A C T G A C G T G A C T C G T A C G T A C G A T C G A T C A G T C G A T C G T A A C T G T C G A
p-value:1e-8
log p-value:-2.053e+01
Information Content per bp:1.758
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.2 +/- 16.0bp
Average Position of motif in Background41.4 +/- 13.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0119.1_Foxa2_2/Jaspar

Match Rank:1
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TNTAAAATTAACACAG--
---AAAAATAACAAACGG
 A G C T A G T C A C G T C G T A G T C A C G T A C G T A A C G T A C G T C G T A C G T A G T A C G T C A G T A C C G T A A T C G A C G T A C G T
A C G T A C G T A C G T T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

ALX3/MA0634.1/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TNTAAAATTAACACAG
--TCTAATTAAA----
 A G C T A G T C A C G T C G T A G T C A C G T A C G T A A C G T A C G T C G T A C G T A G T A C G T C A G T A C C G T A A T C G
A C G T A C G T G A C T A G T C G A C T C T G A G T C A G C A T G A C T G C T A T C G A T G C A A C G T A C G T A C G T A C G T

PH0021.1_Dlx2/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TNTAAAATTAACACAG
GGAATAATTACCTCAG
 A G C T A G T C A C G T C G T A G T C A C G T A C G T A A C G T A C G T C G T A C G T A G T A C G T C A G T A C C G T A A T C G
T C A G T C A G C T A G C T G A G A C T C G T A C G T A C G A T A C G T C T G A A T G C G A C T G A C T G T A C C T G A A C T G

Arid3b/MA0601.1/Jaspar

Match Rank:4
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TNTAAAATTAACACAG
---NTAATTAATAT--
 A G C T A G T C A C G T C G T A G T C A C G T A C G T A A C G T A C G T C G T A C G T A G T A C G T C A G T A C C G T A A T C G
A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T A C G T A C G T

Hoxd3/MA0912.1/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TNTAAAATTAACACAG
ANGNTAATTANCNCAN
 A G C T A G T C A C G T C G T A G T C A C G T A C G T A A C G T A C G T C G T A C G T A G T A C G T C A G T A C C G T A A T C G
T C G A T A C G C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G C A G A T C G A C T G T A C C G T A C T G A

PH0079.1_Hoxd3/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TNTAAAATTAACACAG
ANGNTAATTANCNCAN
 A G C T A G T C A C G T C G T A G T C A C G T A C G T A A C G T A C G T C G T A C G T A G T A C G T C A G T A C C G T A A T C G
T C G A T A C G C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G C A G A T C G A C T G T A C C G T A C T G A

LMX1B/MA0703.1/Jaspar

Match Rank:7
Score:0.63
Offset:3
Orientation:forward strand
Alignment:TNTAAAATTAACACAG
---TTAATTAA-----
 A G C T A G T C A C G T C G T A G T C A C G T A C G T A A C G T A C G T C G T A C G T A G T A C G T C A G T A C C G T A A T C G
A C G T A C G T A C G T A C G T G A C T C G T A G C T A C G A T C G A T G C T A T C G A A C G T A C G T A C G T A C G T A C G T

PH0174.1_Vax1/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TNTAAAATTAACACAG
ACGTTAATTAACCCAG
 A G C T A G T C A C G T C G T A G T C A C G T A C G T A A C G T A C G T C G T A C G T A G T A C G T C A G T A C C G T A A T C G
T G C A T A G C T C A G C G A T G A C T G T C A G C T A C G A T C A G T C T G A T C G A A G T C G A T C G A T C C G T A C T A G

PB0001.1_Arid3a_1/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TNTAAAATTAACACAG
NNNTTTTAATTAANNNN-
 A C G T A C G T A G C T A G T C A C G T C G T A G T C A C G T A C G T A A C G T A C G T C G T A C G T A G T A C G T C A G T A C C G T A A T C G
C T A G C G T A C G T A C A G T G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A T G A C T A G C A T G C A C G T

MIXL1/MA0662.1/Jaspar

Match Rank:10
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TNTAAAATTAACACAG
--TCTAATTAAC----
 A G C T A G T C A C G T C G T A G T C A C G T A C G T A A C G T A C G T C G T A C G T A G T A C G T C A G T A C C G T A A T C G
A C G T A C G T C G A T A G T C G A C T T C G A G C T A A G C T A G C T G C T A T C G A T G A C A C G T A C G T A C G T A C G T