Information for 10-ATGTGTTCAAAGTGAT (Motif 22)

C G T A A C G T C T A G A C G T A C T G A C G T A G C T G T A C C G T A C G T A C G T A C T A G A C G T C A T G C G T A G A C T
Reverse Opposite:
C T G A C G A T G T A C C G T A A G T C A C G T A C G T A C G T A C T G C T G A G T C A G T A C C G T A A G T C C G T A A C G T
p-value:1e-9
log p-value:-2.255e+01
Information Content per bp:1.803
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.6 +/- 22.4bp
Average Position of motif in Background51.2 +/- 14.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:1
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--ATGTGTTCAAAGTGAT
ACATCTGGWWTYAATTAR
 A C G T A C G T C G T A A C G T C T A G A C G T A C T G A C G T A G C T G T A C C G T A C G T A C G T A C T A G A C G T C A T G C G T A G A C T
T G C A G T A C C G T A A C G T T G A C C G A T A C T G A C T G C G A T C G A T G C A T A G C T G C T A C T G A A C G T G A C T G C T A C T G A

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.52
Offset:1
Orientation:forward strand
Alignment:ATGTGTTCAAAGTGAT
-CGGTTTCAAA-----
 C G T A A C G T C T A G A C G T A C T G A C G T A G C T G T A C C G T A C G T A C G T A C T A G A C G T C A T G C G T A G A C T
A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T

Esrra/MA0592.2/Jaspar

Match Rank:3
Score:0.52
Offset:5
Orientation:forward strand
Alignment:ATGTGTTCAAAGTGAT
-----TTCAAGGTCAT
 C G T A A C G T C T A G A C G T A C T G A C G T A G C T G T A C C G T A C G T A C G T A C T A G A C G T C A T G C G T A G A C T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T T A G C C T G A C T G A A C T G A C T G A C G T A T G C T C G A G C A T

Atoh1/MA0461.2/Jaspar

Match Rank:4
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---ATGTGTTCAAAGTGAT
ANCATATGTT---------
 A C G T A C G T A C G T C G T A A C G T C T A G A C G T A C T G A C G T A G C T G T A C C G T A C G T A C G T A C T A G A C G T C A T G C G T A G A C T
C T G A T G C A G T A C G C T A A C G T G T C A A G C T A C T G A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0129.1_Glis2_2/Jaspar

Match Rank:5
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-ATGTGTTCAAAGTGAT
AATATTAATAAAGA---
 A C G T C G T A A C G T C T A G A C G T A C T G A C G T A G C T G T A C C G T A C G T A C G T A C T A G A C G T C A T G C G T A G A C T
G C T A C G T A A C G T C T G A C G A T C A G T C T G A G C T A G C A T G C T A C G T A G T C A C T A G T C G A A C G T A C G T A C G T

Twist2/MA0633.1/Jaspar

Match Rank:6
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---ATGTGTTCAAAGTGAT
ACCATATGTT---------
 A C G T A C G T A C G T C G T A A C G T C T A G A C G T A C T G A C G T A G C T G T A C C G T A C G T A C G T A C T A G A C G T C A T G C G T A G A C T
C T G A G T A C A G T C C G T A A G C T C T G A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

OLIG3/MA0827.1/Jaspar

Match Rank:7
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---ATGTGTTCAAAGTGAT
ANCATATGGT---------
 A C G T A C G T A C G T C G T A A C G T C T A G A C G T A C T G A C G T A G C T G T A C C G T A C G T A C G T A C T A G A C G T C A T G C G T A G A C T
C T G A T G C A G T A C C T G A A C G T T G C A G A C T C A T G A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NEUROG2/MA0669.1/Jaspar

Match Rank:8
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---ATGTGTTCAAAGTGAT
GACATATGTT---------
 A C G T A C G T A C G T C G T A A C G T C T A G A C G T A C T G A C G T A G C T G T A C C G T A C G T A C G T A C T A G A C G T C A T G C G T A G A C T
C T A G T C G A A G T C C G T A A C G T T G C A A G C T C T A G A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

OLIG1/MA0826.1/Jaspar

Match Rank:9
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---ATGTGTTCAAAGTGAT
AACATATGTT---------
 A C G T A C G T A C G T C G T A A C G T C T A G A C G T A C T G A C G T A G C T G T A C C G T A C G T A C G T A C T A G A C G T C A T G C G T A G A C T
C T G A T G C A G T A C C G T A A C G T T G C A G A C T A C T G A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0082.1_Tcf3_1/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:ATGTGTTCAAAGTGAT-
TATAGATCAAAGGAAAA
 C G T A A C G T C T A G A C G T A C T G A C G T A G C T G T A C C G T A C G T A C G T A C T A G A C G T C A T G C G T A G A C T A C G T
G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A