Information for 4-GCAATGGCTG (Motif 15)

A T C G A T G C G T C A C T G A G C A T C A T G C T A G A T G C C G A T C T A G
Reverse Opposite:
G A T C G C T A T A C G G A T C G T A C C G T A G A C T C A G T T A C G T A G C
p-value:1e-8
log p-value:-2.064e+01
Information Content per bp:1.652
Number of Target Sequences with motif115.0
Percentage of Target Sequences with motif12.89%
Number of Background Sequences with motif3390.0
Percentage of Background Sequences with motif7.16%
Average Position of motif in Targets52.3 +/- 26.0bp
Average Position of motif in Background49.9 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GCAATGGCTG--
-TAATGGCGGNC
 A T C G A T G C G T C A C T G A G C A T C A T G C T A G A T G C C G A T C T A G A C G T A C G T
A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:GCAATGGCTG
-----NGCTN
 A T C G A T G C G T C A C T G A G C A T C A T G C T A G A T G C C G A T C T A G
A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:3
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GCAATGGCTG
AGATGCAATCCC--
 A C G T A C G T A C G T A C G T A T C G A T G C G T C A C T G A G C A T C A T G C T A G A T G C C G A T C T A G
T C G A C T A G C T G A A G C T A C T G G T A C G T C A T G C A A G C T T G A C T A G C A G T C A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GCAATGGCTG-
---TWGTCTGV
 A T C G A T G C G T C A C T G A G C A T C A T G C T A G A T G C C G A T C T A G A C G T
A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GCAATGGCTG
VRAACAATGG---
 A C G T A C G T A C G T A T C G A T G C G T C A C T G A G C A T C A T G C T A G A T G C C G A T C T A G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T

Tcf21/MA0832.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCAATGGCTG----
GCAACAGCTGTTGT
 A T C G A T G C G T C A C T G A G C A T C A T G C T A G A T G C C G A T C T A G A C G T A C G T A C G T A C G T
T C A G G A T C C T G A G T C A A G T C G T C A A C T G A G T C A C G T A C T G A C G T G A C T T C A G A G C T

Sox2/MA0143.3/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCAATGGCTG
AACAAAGG---
 A C G T A T C G A T G C G T C A C T G A G C A T C A T G C T A G A T G C C G A T C T A G
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCAATGGCTG----
AGAAATGACTTCCCT
 A C G T A T C G A T G C G T C A C T G A G C A T C A T G C T A G A T G C C G A T C T A G A C G T A C G T A C G T A C G T
C T G A C T A G T G C A C T G A T C G A A G C T C A T G T C G A A G T C G A C T A C G T A G T C G A T C G A T C G A C T

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCAATGGCTG--
TGATTGGCTANN
 A T C G A T G C G T C A C T G A G C A T C A T G C T A G A T G C C G A T C T A G A C G T A C G T
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCAATGGCTG
GAACAATGGN--
 A C G T A C G T A T C G A T G C G T C A C T G A G C A T C A T G C T A G A T G C C G A T C T A G
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T