Information for 2-GGACAGCGCT (Motif 2)

A C T G T C A G C G T A T G A C T G C A T C A G T A G C C A T G G T A C G A C T
Reverse Opposite:
C T G A C A T G G T A C A T C G A G T C A C G T A C T G G C A T A G T C G T A C
p-value:1e-25
log p-value:-5.824e+01
Information Content per bp:1.678
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif5.03%
Number of Background Sequences with motif254.8
Percentage of Background Sequences with motif0.52%
Average Position of motif in Targets53.7 +/- 23.8bp
Average Position of motif in Background46.9 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GGACAGCGCT
-CACAGN---
 A C T G T C A G C G T A T G A C T G C A T C A G T A G C C A T G G T A C G A C T
A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GGACAGCGCT
CCAGGAACAG----
 A C G T A C G T A C G T A C G T A C T G T C A G C G T A T G A C T G C A T C A G T A G C C A T G G T A C G A C T
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T

REST/MA0138.2/Jaspar

Match Rank:3
Score:0.62
Offset:-11
Orientation:forward strand
Alignment:-----------GGACAGCGCT
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G T C A G C G T A T G A C T G C A T C A G T A G C C A T G G T A C G A C T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GGACAGCGCT
---CAGCC--
 A C T G T C A G C G T A T G A C T G C A T C A G T A G C C A T G G T A C G A C T
A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:5
Score:0.61
Offset:-10
Orientation:reverse strand
Alignment:----------GGACAGCGCT
TCAGCACCATGGACAGCTCC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G T C A G C G T A T G A C T G C A T C A G T A G C C A T G G T A C G A C T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GGACAGCGCT
TTGACAGC---
 A C G T A C T G T C A G C G T A T G A C T G C A T C A G T A G C C A T G G T A C G A C T
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGACAGCGCT------
CGAACAGTGCTCACTAT
 A C G T A C T G T C A G C G T A T G A C T G C A T C A G T A G C C A T G G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GGACAGCGCT
TRAGGTCA-----
 A C G T A C G T A C G T A C T G T C A G C G T A T G A C T G C A T C A G T A G C C A T G G T A C G A C T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GGACAGCGCT
AGGTCA-----
 A C G T A C T G T C A G C G T A T G A C T G C A T C A G T A G C C A T G G T A C G A C T
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:10
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GGACAGCGCT--
GATATTGACAGCTGCGT
 A C G T A C G T A C G T A C G T A C G T A C T G T C A G C G T A T G A C T G C A T C A G T A G C C A T G G T A C G A C T A C G T A C G T
C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T