Information for 8-AGATTMATCTTSA (Motif 11)

C G T A A C T G C G T A A C G T C G A T G T C A G T C A A C G T G A T C A C G T A C G T A T C G C G T A
Reverse Opposite:
A C G T A T G C C G T A C G T A C T A G C G T A A C G T A C G T C G T A C G T A A C G T A G T C A C G T
p-value:1e-8
log p-value:-1.966e+01
Information Content per bp:1.915
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets63.4 +/- 28.8bp
Average Position of motif in Background42.6 +/- 16.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0130.1_Otx2/Jaspar

Match Rank:1
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----AGATTMATCTTSA
TGTAGGGATTAATTGTC-
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C G T C G A T G T C A G T C A A C G T G A T C A C G T A C G T A T C G C G T A
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C A C G T

PB0144.1_Lef1_2/Jaspar

Match Rank:2
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----AGATTMATCTTSA
NNANTGATTGATNTTN-
 A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C G T C G A T G T C A G T C A A C G T G A T C A C G T A C G T A T C G C G T A
G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C A C G T

PH0138.1_Pitx2/Jaspar

Match Rank:3
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----AGATTMATCTTSA
TGAAGGGATTAATCATC-
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C G T C G A T G T C A G T C A A C G T G A T C A C G T A C G T A T C G C G T A
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C A C G T

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:4
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----AGATTMATCTTSA
NNANTGATTGATNNNN-
 A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C G T C G A T G T C A G T C A A C G T G A T C A C G T A C G T A T C G C G T A
G C A T C G A T T G C A T A C G G A C T C T A G G T C A G A C T C G A T T C A G C G T A C G A T A T G C A G C T G A C T A T G C A C G T

PH0129.1_Otx1/Jaspar

Match Rank:5
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----AGATTMATCTTSA
AGAGGGGATTAATTTAT-
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C G T C G A T G T C A G T C A A C G T G A T C A C G T A C G T A T C G C G T A
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:6
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AGATTMATCTTSA
---TTAATCCT--
 C G T A A C T G C G T A A C G T C G A T G T C A G T C A A C G T G A T C A C G T A C G T A T C G C G T A
A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T A C G T A C G T

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AGATTMATCTTSA---
---TTAATGTTTAACC
 C G T A A C T G C G T A A C G T C G A T G T C A G T C A A C G T G A T C A C G T A C G T A T C G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C T G A G T C A G C A T T A C G C G A T C A G T G A C T G C T A C G T A G A T C G A T C

Arid3b/MA0601.1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AGATTMATCTTSA
NTAATTAATAT---
 A C G T C G T A A C T G C G T A A C G T C G A T G T C A G T C A A C G T G A T C A C G T A C G T A T C G C G T A
A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T A C G T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AGATTMATCTTSA----
--ATGAATATTCATGAG
 C G T A A C T G C G T A A C G T C G A T G T C A G T C A A C G T G A T C A C G T A C G T A T C G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGATTMATCTTSA
RGGATTAR------
 A C G T C G T A A C T G C G T A A C G T C G A T G T C A G T C A A C G T G A T C A C G T A C G T A T C G C G T A
T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T