Information for 3-CCATTGGACG (Motif 7)

A T G C T A G C C G T A A G C T C A G T A C T G T A C G G T C A G A T C T C A G
Reverse Opposite:
A G T C C T A G C A G T A T G C T G A C G T C A T C G A G C A T A T C G T A C G
p-value:1e-13
log p-value:-3.011e+01
Information Content per bp:1.656
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif5.44%
Number of Background Sequences with motif722.0
Percentage of Background Sequences with motif1.56%
Average Position of motif in Targets47.7 +/- 23.3bp
Average Position of motif in Background50.5 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-CCATTGGACG
CCGATTGGCT-
 A C G T A T G C T A G C C G T A A G C T C A G T A C T G T A C G G T C A G A T C T C A G
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CCATTGGACG--
TGATTGGCTANN
 A T G C T A G C C G T A A G C T C A G T A C T G T A C G G T C A G A T C T C A G A C G T A C G T
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CCATTGGACG-
TCACCTCTGGGCAG
 A C G T A C G T A C G T A T G C T A G C C G T A A G C T C A G T A C T G T A C G G T C A G A T C T C A G A C G T
G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G

SOX9/MA0077.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCATTGGACG
CCATTGTTC-
 A T G C T A G C C G T A A G C T C A G T A C T G T A C G G T C A G A T C T C A G
A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCATTGGACG
CCATTGTTYB
 A T G C T A G C C G T A A G C T C A G T A C T G T A C G G T C A G A T C T C A G
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

NFYB/MA0502.1/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCATTGGACG----
CTGATTGGTCNATTT
 A C G T A T G C T A G C C G T A A G C T C A G T A C T G T A C G G T C A G A T C T C A G A C G T A C G T A C G T A C G T
A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

PB0132.1_Hbp1_2/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CCATTGGACG--
TGTTCCCATTGTGTACT
 A C G T A C G T A C G T A C G T A C G T A T G C T A G C C G T A A G C T C A G T A C T G T A C G G T C A G A T C T C A G A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCATTGGACG
NCCATTGTTC-
 A C G T A T G C T A G C C G T A A G C T C A G T A C T G T A C G G T C A G A T C T C A G
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCATTGGACG-
NTGCCCTTGGGCGN
 A C G T A C G T A C G T A T G C T A G C C G T A A G C T C A G T A C T G T A C G G T C A G A T C T C A G A C G T
G A T C G C A T T C A G G T A C G A T C G A T C C G A T G A C T C T A G C T A G C A T G A G T C C T A G T A C G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCATTGGACG
CCWTTGTY--
 A T G C T A G C C G T A A G C T C A G T A C T G T A C G G T C A G A T C T C A G
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T