Information for 1-CBMAATAAAAATCATA (Motif 4)

A T G C A C G T G T A C C G T A C T G A A G C T G C T A C T G A C G T A C G T A T C G A A G C T G T A C G C T A C G A T C G T A
Reverse Opposite:
C G A T G C T A C G A T A C T G C T G A A G C T G A C T A C G T A G C T C A G T C T G A A G C T A C G T A C G T T G A C A T C G
p-value:1e-12
log p-value:-2.942e+01
Information Content per bp:1.716
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.38%
Number of Background Sequences with motif21.1
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets40.7 +/- 10.9bp
Average Position of motif in Background47.8 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0078.1_Hoxd13/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CBMAATAAAAATCATA
CTACCAATAAAATTCT--
 A C G T A C G T A T G C A C G T G T A C C G T A C T G A A G C T G C T A C T G A C G T A C G T A T C G A A G C T G T A C G C T A C G A T C G T A
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CBMAATAAAAATCATA
AACCCAATAAAATTCG--
 A C G T A C G T A T G C A C G T G T A C C G T A C T G A A G C T G C T A C T G A C G T A C G T A T C G A A G C T G T A C G C T A C G A T C G T A
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G A C G T A C G T

PH0046.1_Hoxa10/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CBMAATAAAAATCATA
TAGGTAATAAAATTCA--
 A C G T A C G T A T G C A C G T G T A C C G T A C T G A A G C T G C T A C T G A C G T A C G T A T C G A A G C T G T A C G C T A C G A T C G T A
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CBMAATAAAAATCATA
-CCAATAAAAA-----
 A T G C A C G T G T A C C G T A C T G A A G C T G C T A C T G A C G T A C G T A T C G A A G C T G T A C G C T A C G A T C G T A
A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CBMAATAAAAATCATA
-CCAATAAAAA-----
 A T G C A C G T G T A C C G T A C T G A A G C T G C T A C T G A C G T A C G T A T C G A A G C T G T A C G C T A C G A T C G T A
A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CBMAATAAAAATCATA
-CCAATAAAAC-----
 A T G C A C G T G T A C C G T A C T G A A G C T G C T A C T G A C G T A C G T A T C G A A G C T G T A C G C T A C G A T C G T A
A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CBMAATAAAAATCATA
AATGCAATAAAATTTAT-
 A C G T A C G T A T G C A C G T G T A C C G T A C T G A A G C T G C T A C T G A C G T A C G T A T C G A A G C T G T A C G C T A C G A T C G T A
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CBMAATAAAAATCATA
-GCAATAAAAA-----
 A T G C A C G T G T A C C G T A C T G A A G C T G C T A C T G A C G T A C G T A T C G A A G C T G T A C G C T A C G A T C G T A
A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CBMAATAAAAATCATA
NGCAATTAAA------
 A T G C A C G T G T A C C G T A C T G A A G C T G C T A C T G A C G T A C G T A T C G A A G C T G T A C G C T A C G A T C G T A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CBMAATAAAAATCATA
AGAGCCATAAAATTCG--
 A C G T A C G T A T G C A C G T G T A C C G T A C T G A A G C T G C T A C T G A C G T A C G T A T C G A A G C T G T A C G C T A C G A T C G T A
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G A C G T A C G T