Information for 3-GAGRARKCCTTCARAG (Motif 4)

A C T G C G T A A C T G C T A G C G T A C T A G A C G T A T G C A T G C A C G T C G A T G A T C C G T A C T A G C G T A C T A G
Reverse Opposite:
A G T C A C G T A G T C C G A T C A T G C G T A C G T A A T C G A T C G G T C A A G T C A C G T A G T C G T A C C G A T T G A C
p-value:1e-12
log p-value:-2.887e+01
Information Content per bp:1.748
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.4 +/- 25.4bp
Average Position of motif in Background19.9 +/- 7.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0116.1_Nkx2-9/Jaspar

Match Rank:1
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GAGRARKCCTTCARAG
NATTTAAGTACTTNAAA-
 A C G T A C G T A C T G C G T A A C T G C T A G C G T A C T A G A C G T A T G C A T G C A C G T C G A T G A T C C G T A C T A G C G T A C T A G
C T G A G C T A C G A T G C A T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T G C T A C G T A C T G A G C T A A C G T

PH0112.1_Nkx2-3/Jaspar

Match Rank:2
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GAGRARKCCTTCARAG
CNTTAAGTACTTAANG-
 A C G T A C T G C G T A A C T G C T A G C G T A C T A G A C G T A T G C A T G C A C G T C G A T G A T C C G T A C T A G C G T A C T A G
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G A C G T

PH0117.1_Nkx3-1/Jaspar

Match Rank:3
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GAGRARKCCTTCARAG
TACTAAGTACTTAAATG
 A C G T A C T G C G T A A C T G C T A G C G T A C T A G A C G T A T G C A T G C A C G T C G A T G A T C C G T A C T A G C G T A C T A G
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.53
Offset:7
Orientation:forward strand
Alignment:GAGRARKCCTTCARAG-
-------ACATCAAAGG
 A C T G C G T A A C T G C T A G C G T A C T A G A C G T A T G C A T G C A C G T C G A T G A T C C G T A C T A G C G T A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:5
Score:0.52
Offset:7
Orientation:forward strand
Alignment:GAGRARKCCTTCARAG-
-------ACWTCAAAGG
 A C T G C G T A A C T G C T A G C G T A C T A G A C G T A T G C A T G C A C G T C G A T G A T C C G T A C T A G C G T A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G

TATA-Box(TBP)/Promoter/Homer

Match Rank:6
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:GAGRARKCCTTCARAG-
-----GNCTATAAAAGG
 A C T G C G T A A C T G C T A G C G T A C T A G A C G T A T G C A T G C A C G T C G A T G A T C C G T A C T A G C G T A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

BCL6B/MA0731.1/Jaspar

Match Rank:7
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GAGRARKCCTTCARAG--
-TGAATTCCTAGAAAGCA
 A C T G C G T A A C T G C T A G C G T A C T A G A C G T A T G C A T G C A C G T C G A T G A T C C G T A C T A G C G T A C T A G A C G T A C G T
A C G T A C G T A C T G C T G A C T G A A C G T A G C T A G T C A G T C A C G T T G C A A C T G G T C A C G T A C G T A C T A G G A T C C T G A

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:8
Score:0.51
Offset:5
Orientation:forward strand
Alignment:GAGRARKCCTTCARAG
-----CGGTTTCAAA-
 A C T G C G T A A C T G C T A G C G T A C T A G A C G T A T G C A T G C A C G T C G A T G A T C C G T A C T A G C G T A C T A G
A C G T A C G T A C G T A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T

TCF7L2/MA0523.1/Jaspar

Match Rank:9
Score:0.51
Offset:5
Orientation:forward strand
Alignment:GAGRARKCCTTCARAG---
-----AAAGATCAAAGGAA
 A C T G C G T A A C T G C T A G C G T A C T A G A C G T A T G C A T G C A C G T C G A T G A T C C G T A C T A G C G T A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A

LIN54/MA0619.1/Jaspar

Match Rank:10
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:GAGRARKCCTTCARAG
-------NATTCAAAT
 A C T G C G T A A C T G C T A G C G T A C T A G A C G T A T G C A T G C A C G T C G A T G A T C C G T A C T A G C G T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T