Information for 5-RARAARRAGARAGAGA (Motif 21)

T C G A T C G A T C G A C T G A C T G A C T G A C T A G C G T A T A C G G T C A C T G A C G T A C T A G C T G A C T A G C T G A
Reverse Opposite:
A G C T A G T C A G C T A G T C A C G T A G C T A C G T A G T C A C G T A G T C A G C T A G C T A G C T A G C T A G C T A G C T
p-value:1e-6
log p-value:-1.611e+01
Information Content per bp:1.719
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.36%
Number of Background Sequences with motif85.5
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets60.0 +/- 24.7bp
Average Position of motif in Background48.5 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM1/MA0508.1/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:RARAARRAGARAGAGA
-AGAAAGTGAAAGTGA
 T C G A T C G A T C G A C T G A C T G A C T G A C T A G C G T A T A C G G T C A C T G A C G T A C T A G C T G A C T A G C T G A
A C G T C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:RARAARRAGARAGAGA
--GAAAGTGAAAGT--
 T C G A T C G A T C G A C T G A C T G A C T G A C T A G C G T A T A C G G T C A C T G A C G T A C T A G C T G A C T A G C T G A
A C G T A C G T T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T

IRF1/MA0050.2/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---RARAARRAGARAGAGA--
AAANNGAAAGTGAAAGTAAAN
 A C G T A C G T A C G T T C G A T C G A T C G A C T G A C T G A C T G A C T A G C G T A T A C G G T C A C T G A C G T A C T A G C T G A C T A G C T G A A C G T A C G T
C T G A C G T A C T G A T C A G G C A T T C A G C T G A C T G A C G T A T A C G G A C T C T A G T C G A C T G A C G T A T A C G G A C T T C G A T C G A C T G A C T G A

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:RARAARRAGARAGAGA
----AAAACAAAGG--
 T C G A T C G A T C G A C T G A C T G A C T G A C T A G C G T A T A C G G T C A C T G A C G T A C T A G C T G A C T A G C T G A
A C G T A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:RARAARRAGARAGAGA-
-AAACAGACAAAGGAAT
 T C G A T C G A T C G A C T G A C T G A C T G A C T A G C G T A T A C G G T C A C T G A C G T A C T A G C T G A C T A G C T G A A C G T
A C G T T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:RARAARRAGARAGAGA
----GGAACAAAGR--
 T C G A T C G A T C G A C T G A C T G A C T G A C T A G C G T A T A C G G T C A C T G A C G T A C T A G C T G A C T A G C T G A
A C G T A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:RARAARRAGARAGAGA
--GAAAGTGAAAGT--
 T C G A T C G A T C G A C T G A C T G A C T G A C T A G C G T A T A C G G T C A C T G A C G T A C T A G C T G A C T A G C T G A
A C G T A C G T T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:RARAARRAGARAGAGA--
-AGAAGAACAAAGGACTA
 T C G A T C G A T C G A C T G A C T G A C T G A C T A G C G T A T A C G G T C A C T G A C G T A C T A G C T G A C T A G C T G A A C G T A C G T
A C G T G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

STAT1::STAT2/MA0517.1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:RARAARRAGARAGAGA
-GGAAANTGAAACTNA
 T C G A T C G A T C G A C T G A C T G A C T G A C T A G C G T A T A C G G T C A C T G A C G T A C T A G C T G A C T A G C T G A
A C G T T C A G C T A G C T G A C G T A T C G A T G C A G A C T C T A G T C G A C G T A C T G A A T G C G A C T C T A G G T C A

IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:RARAARRAGARAGAGA
--GRAASTGAAAST--
 T C G A T C G A T C G A C T G A C T G A C T G A C T A G C G T A T A C G G T C A C T G A C G T A C T A G C T G A C T A G C T G A
A C G T A C G T T C A G T C A G G C T A C G T A T A C G G A C T T C A G T C G A C T G A C G T A T A C G G A C T A C G T A C G T