Information for 9-CCATATTAGGAGC (Motif 9)

A T G C G T A C C T G A C G A T G C T A C G A T C G A T C G T A A C T G A T C G G C T A A T C G A G T C
Reverse Opposite:
C T A G T A G C C A G T A T G C T A G C G C A T G C T A C G T A C G A T G C T A G A C T A C T G T A C G
p-value:1e-11
log p-value:-2.745e+01
Information Content per bp:1.672
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.29%
Number of Background Sequences with motif26.0
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets54.7 +/- 24.8bp
Average Position of motif in Background56.6 +/- 21.2bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:1
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--CCATATTAGGAGC
TNCCATATATGG---
 A C G T A C G T A T G C G T A C C T G A C G A T G C T A C G A T C G A T C G T A A C T G A T C G G C T A A T C G A G T C
C A G T A C T G G A T C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G A T C G A C G T A C G T A C G T

PB0078.1_Srf_1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CCATATTAGGAGC
TNCCATATATGGNA-
 A C G T A C G T A T G C G T A C C T G A C G A T G C T A C G A T C G A T C G T A A C T G A T C G G C T A A T C G A G T C
C A G T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A C G A T C T A G C A T G C G T A C G T A A C G T

MF0008.1_MADS_class/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCATATTAGGAGC
CCATATATGG---
 A T G C G T A C C T G A C G A T G C T A C G A T C G A T C G T A A C T G A T C G G C T A A T C G A G T C
G A T C A G T C G C T A C G A T C G T A C G A T C G T A G C A T C T A G C A T G A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:4
Score:0.62
Offset:7
Orientation:reverse strand
Alignment:CCATATTAGGAGC
-------CGGAGC
 A T G C G T A C C T G A C G A T G C T A C G A T C G A T C G T A A C T G A T C G G C T A A T C G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C

HOXC13/MA0907.1/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CCATATTAGGAGC
--NTTTTACGAGN
 A T G C G T A C C T G A C G A T G C T A C G A T C G A T C G T A A C T G A T C G G C T A A T C G A G T C
A C G T A C G T C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

SRF/MA0083.3/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CCATATTAGGAGC
TGACCATATATGGTCA
 A C G T A C G T A C G T A T G C G T A C C T G A C G A T G C T A C G A T C G A T C G T A A C T G A T C G G C T A A T C G A G T C
G C A T A C T G G T C A A T G C A G T C C G T A C G A T C T G A A C G T C G T A G C A T T A C G C T A G C A G T T G A C C G T A

PH0048.1_Hoxa13/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CCATATTAGGAGC---
ANATTTTACGAGNNNN
 A T G C G T A C C T G A C G A T G C T A C G A T C G A T C G T A A C T G A T C G G C T A A T C G A G T C A C G T A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

PH0068.1_Hoxc13/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CCATATTAGGAGC---
NAATTTTACGAGNTNN
 A T G C G T A C C T G A C G A T G C T A C G A T C G A T C G T A A C T G A T C G G C T A A T C G A G T C A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

PH0089.1_Isx/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CCATATTAGGAGC
ACNNCTAATTAGNNNN
 A C G T A C G T A C G T A T G C G T A C C T G A C G A T G C T A C G A T C G A T C G T A A C T G A T C G G C T A A T C G A G T C
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.53
Offset:9
Orientation:forward strand
Alignment:CCATATTAGGAGC-
---------CAGCC
 A T G C G T A C C T G A C G A T G C T A C G A T C G A T C G T A A C T G A T C G G C T A A T C G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C