Information for 4-CCAATAAAGTTDT (Motif 2)

G T A C G A T C C T G A C G T A A C G T C G T A C G T A C G T A A C T G A G C T A C G T C A G T C A G T
Reverse Opposite:
G T C A G T C A C G T A C T G A A G T C A C G T A C G T A C G T C G T A A C G T A G C T C T A G C A T G
p-value:1e-60
log p-value:-1.391e+02
Information Content per bp:1.820
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.47%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.2 +/- 20.9bp
Average Position of motif in Background85.1 +/- 11.5bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA13/MA0650.1/Jaspar

Match Rank:1
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CCAATAAAGTTDT
CCAATAAAAA---
 G T A C G A T C C T G A C G T A A C G T C G T A C G T A C G T A A C T G A G C T A C G T C A G T C A G T
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:2
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---CCAATAAAGTTDT
CTACCAATAAAATTCT
 A C G T A C G T A C G T G T A C G A T C C T G A C G T A A C G T C G T A C G T A C G T A A C T G A G C T A C G T C A G T C A G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

HOXB13/MA0901.1/Jaspar

Match Rank:3
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CCAATAAAGTTDT
CCAATAAAAC---
 G T A C G A T C C T G A C G T A A C G T C G T A C G T A C G T A A C T G A G C T A C G T C A G T C A G T
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:4
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---CCAATAAAGTTDT
AACCCAATAAAATTCG
 A C G T A C G T A C G T G T A C G A T C C T G A C G T A A C G T C G T A C G T A C G T A A C T G A G C T A C G T C A G T C A G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

PH0075.1_Hoxd10/Jaspar

Match Rank:5
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---CCAATAAAGTTDT-
AATGCAATAAAATTTAT
 A C G T A C G T A C G T G T A C G A T C C T G A C G T A A C G T C G T A C G T A C G T A A C T G A G C T A C G T C A G T C A G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

HOXD13/MA0909.1/Jaspar

Match Rank:6
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CCAATAAAGTTDT
CCAATAAAAA---
 G T A C G A T C C T G A C G T A A C G T C G T A C G T A C G T A A C T G A G C T A C G T C A G T C A G T
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CCAATAAAGTTDT
GCAATAAAA----
 G T A C G A T C C T G A C G T A A C G T C G T A C G T A C G T A A C T G A G C T A C G T C A G T C A G T
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:8
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CCAATAAAGTTDT
CCYMATAAAA----
 A C G T G T A C G A T C C T G A C G T A A C G T C G T A C G T A C G T A A C T G A G C T A C G T C A G T C A G T
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CCAATAAAGTTDT
NCYAATAAAA----
 A C G T G T A C G A T C C T G A C G T A A C G T C G T A C G T A C G T A A C T G A G C T A C G T C A G T C A G T
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CCAATAAAGTTDT
NGYCATAAAWCH--
 A C G T G T A C G A T C C T G A C G T A A C G T C G T A C G T A C G T A A C T G A G C T A C G T C A G T C A G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T