Information for 3-GCATTGAACG (Motif 9)

A C T G A G T C C G T A A C G T A C G T A C T G C G T A C G T A A G T C A C T G
Reverse Opposite:
A G T C A C T G A C G T A C G T A G T C C G T A C G T A A C G T A C T G A G T C
p-value:1e-3
log p-value:-7.441e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif3.57%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0005.1_Bbx_1/Jaspar

Match Rank:1
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GCATTGAACG-
NANTTCATTGAATTA
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A C G T A C T G C G T A C G T A A G T C A C T G A C G T
G A T C C G T A T A G C C G A T C G A T T G A C G C T A G C A T C G A T A C T G C G T A G C T A G A C T C G A T C G T A

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCATTGAACG-
GGGATTGCATNN
 A C G T A C T G A G T C C G T A A C G T A C G T A C T G C G T A C G T A A G T C A C T G A C G T
T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:3
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCATTGAACG--
--ATTGATTYND
 A C T G A G T C C G T A A C G T A C G T A C T G C G T A C G T A A G T C A C T G A C G T A C G T
A C G T A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCATTGAACG
TGACCTTGACCT
 A C G T A C G T A C T G A G T C C G T A A C G T A C G T A C T G C G T A C G T A A G T C A C T G
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

Hmx1/MA0896.1/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GCATTGAACG---
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A C G T A C T G C G T A C G T A A G T C A C T G A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GCATTGAACG---
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A C G T A C T G C G T A C G T A A G T C A C T G A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:7
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GCATTGAACG-
GCTGACCTTGAACTN
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A C G T A C T G C G T A C G T A A G T C A C T G A C G T
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

PB0028.1_Hbp1_1/Jaspar

Match Rank:8
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----GCATTGAACG-
NNCATTCATTCATNNN
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A C G T A C T G C G T A C G T A A G T C A C T G A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GCATTGAACG
CCTTTGATGT
 A C T G A G T C C G T A A C G T A C G T A C T G C G T A C G T A A G T C A C T G
A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GCATTGAACG
NTATYGATCH
 A C T G A G T C C G T A A C G T A C G T A C T G C G T A C G T A A G T C A C T G
C T A G C A G T C G T A A C G T A G T C A C T G C G T A A G C T A G T C G A T C