Information for 3-CAAGGTATTTAAA (Motif 5)

G T A C C G T A C G T A A C T G A C T G A C G T C G T A A C G T A C G T A C G T C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T C G T A C G T A C G T A A C G T C G T A A G T C A G T C A C G T C G A T A C T G
p-value:1e-6
log p-value:-1.423e+01
Information Content per bp:1.940
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif7.14%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.0 +/- 27.0bp
Average Position of motif in Background49.8 +/- 19.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.70
Offset:5
Orientation:reverse strand
Alignment:CAAGGTATTTAAA-
-----NATTCAAAT
 G T A C C G T A C G T A A C T G A C T G A C G T C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

PH0117.1_Nkx3-1/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CAAGGTATTTAAA--
TACTAAGTACTTAAATG
 A C G T A C G T G T A C C G T A C G T A A C T G A C T G A C G T C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

PH0012.1_Cdx1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CAAGGTATTTAAA---
TAAGGTAATAAAATTA
 G T A C C G T A C G T A A C T G A C T G A C G T C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C G T A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

PH0046.1_Hoxa10/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CAAGGTATTTAAA----
-TAGGTAATAAAATTCA
 G T A C C G T A C G T A A C T G A C T G A C G T C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

PH0073.1_Hoxc9/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CAAGGTATTTAAA---
GGAGGTCATTAATTAT
 G T A C C G T A C G T A A C T G A C T G A C G T C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C G T A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

PH0118.1_Nkx6-1_1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CAAGGTATTTAAA----
CNNAGTAATTAATTNNC
 G T A C C G T A C G T A A C T G A C T G A C G T C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
T A G C T C A G T C G A C T G A C A T G G A C T G T C A C G T A C G A T C G A T C T G A G C T A C G A T G C A T C G A T A C G T G A T C

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:7
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CAAGGTATTTAAA
---CGGTTTCAAA
 G T A C C G T A C G T A A C T G A C T G A C G T C G T A A C G T A C G T A C G T C G T A C G T A C G T A
A C G T A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A

PH0071.1_Hoxc6/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CAAGGTATTTAAA----
CAAATTAATTAATAAAA
 G T A C C G T A C G T A A C T G A C T G A C G T C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A G T C C T G A G C T A T C G A C A G T G A C T G C T A C G T A C G A T C G A T C T G A G T C A A C G T C G T A T C G A T G C A C G T A

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:9
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CAAGGTATTTAAA
---NGCAATTAAA
 G T A C C G T A C G T A A C T G A C T G A C G T C G T A A C G T A C G T A C G T C G T A C G T A C G T A
A C G T A C G T A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

MNX1/MA0707.1/Jaspar

Match Rank:10
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CAAGGTATTTAAA
---GGTAATTAAA
 G T A C C G T A C G T A A C T G A C T G A C G T C G T A A C G T A C G T A C G T C G T A C G T A C G T A
A C G T A C G T A C G T C T A G T A C G A G C T G T C A G T C A G A C T C G A T C G T A C G T A G T C A