Information for 3-CGGCTGTTCTAGGTDT (Motif 4)

A T G C C T A G A T C G A G T C A G C T A T C G A C G T A G C T A G T C C G A T C G T A C T A G A C T G A C G T C A T G A C G T
Reverse Opposite:
G T C A G A T C C G T A A G T C A G T C A C G T C G T A T C A G C T G A C G T A A T G C C T G A A C T G A T G C G A T C A T C G
p-value:1e-11
log p-value:-2.745e+01
Information Content per bp:1.757
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.4 +/- 29.3bp
Average Position of motif in Background52.4 +/- 14.8bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CGGCTGTTCTAGGTDT
---CTGTTCCTGG---
 A T G C C T A G A T C G A G T C A G C T A T C G A C G T A G C T A G T C C G A T C G T A C T A G A C T G A C G T C A T G A C G T
A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T A C G T

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:2
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CGGCTGTTCTAGGTDT
CAGCTGTT--------
 A T G C C T A G A T C G A G T C A G C T A T C G A C G T A G C T A G T C C G A T C G T A C T A G A C T G A C G T C A T G A C G T
A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

REST/MA0138.2/Jaspar

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CGGCTGTTCTAGGTDT----
GGCGCTGTCCATGGTGCTGAA
 A C G T A T G C C T A G A T C G A G T C A G C T A T C G A C G T A G C T A G T C C G A T C G T A C T A G A C T G A C G T C A T G A C G T A C G T A C G T A C G T A C G T
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:4
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CGGCTGTTCTAGGTDT---
GGAGCTGTCCATGGTGCTGA
 A C G T A T G C C T A G A T C G A G T C A G C T A T C G A C G T A G C T A G T C C G A T C G T A C T A G A C T G A C G T C A T G A C G T A C G T A C G T A C G T
C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

Tcf12/MA0521.1/Jaspar

Match Rank:5
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CGGCTGTTCTAGGTDT
NNGCAGCTGTT--------
 A C G T A C G T A C G T A T G C C T A G A T C G A G T C A G C T A T C G A C G T A G C T A G T C C G A T C G T A C T A G A C T G A C G T C A T G A C G T
A T G C G C A T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CGGCTGTTCTAGGTDT
---CTATTTTTGG---
 A T G C C T A G A T C G A G T C A G C T A T C G A C G T A G C T A G T C C G A T C G T A C T A G A C T G A C G T C A T G A C G T
A C G T A C G T A C G T A T G C A G C T G T C A C G A T C G A T A G C T G A C T G C A T C T G A C A T G A C G T A C G T A C G T

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:7
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CGGCTGTTCTAGGTDT
ACAGCTGTTV-------
 A C G T A T G C C T A G A T C G A G T C A G C T A T C G A C G T A G C T A G T C C G A T C G T A C T A G A C T G A C G T C A T G A C G T
T C G A A G T C C G T A T A C G A T G C A C G T A C T G A G C T A G C T T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MSC/MA0665.1/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CGGCTGTTCTAGGTDT
AACAGCTGTT--------
 A C G T A C G T A T G C C T A G A T C G A G T C A G C T A T C G A C G T A G C T A G T C C G A T C G T A C T A G A C T G A C G T C A T G A C G T
C T G A T G C A A T G C C G T A A T C G A T G C A C G T A C T G A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Myog/MA0500.1/Jaspar

Match Rank:9
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CGGCTGTTCTAGGTDT
NNGCAGCTGTC--------
 A C G T A C G T A C G T A T G C C T A G A T C G A G T C A G C T A T C G A C G T A G C T A G T C C G A T C G T A C T A G A C T G A C G T C A T G A C G T
A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TBX5/MA0807.1/Jaspar

Match Rank:10
Score:0.52
Offset:10
Orientation:forward strand
Alignment:CGGCTGTTCTAGGTDT--
----------AGGTGTGA
 A T G C C T A G A T C G A G T C A G C T A T C G A C G T A G C T A G T C C G A T C G T A C T A G A C T G A C G T C A T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C A G A C T G A C G T C T A G A G C T A C T G C T G A