Information for 1-AGCCAATSGA (Motif 1)

C G T A A C T G A G T C A G T C C G T A C T G A A C G T T A G C T C A G T G C A
Reverse Opposite:
A C G T A G T C A T C G G T C A G A C T A C G T A C T G A C T G A G T C A C G T
p-value:1e-18
log p-value:-4.301e+01
Information Content per bp:1.766
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif4.85%
Number of Background Sequences with motif281.5
Percentage of Background Sequences with motif0.58%
Average Position of motif in Targets42.9 +/- 26.8bp
Average Position of motif in Background48.7 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.88
Offset:-3
Orientation:forward strand
Alignment:---AGCCAATSGA
ACTAGCCAATCA-
 A C G T A C G T A C G T C G T A A C T G A G T C A G T C C G T A C T G A A C G T T A G C T C A G T G C A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.85
Offset:0
Orientation:forward strand
Alignment:AGCCAATSGA
AGCCAATCGG
 C G T A A C T G A G T C A G T C C G T A C T G A A C G T T A G C T C A G T G C A
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:AGCCAATSGA
TGCCAA----
 C G T A A C T G A G T C A G T C C G T A C T G A A C G T T A G C T C A G T G C A
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--AGCCAATSGA
CGTGCCAAG---
 A C G T A C G T C G T A A C T G A G T C A G T C C G T A C T G A A C G T T A G C T C A G T G C A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:5
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----AGCCAATSGA
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C A G T C C G T A C T G A A C G T T A G C T C A G T G C A
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--AGCCAATSGA
BCAGACWA----
 A C G T A C G T C G T A A C T G A G T C A G T C C G T A C T G A A C G T T A G C T C A G T G C A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AGCCAATSGA
CAGCC------
 A C G T C G T A A C T G A G T C A G T C C G T A C T G A A C G T T A G C T C A G T G C A
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGCCAATSGA
GGTGCCAAGT--
 A C G T A C G T C G T A A C T G A G T C A G T C C G T A C T G A A C G T T A G C T C A G T G C A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

PH0026.1_Duxbl/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGCCAATSGA-----
CGACCCAATCAACGGTG
 A C G T A C G T C G T A A C T G A G T C A G T C C G T A C T G A A C G T T A G C T C A G T G C A A C G T A C G T A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

NFYA/MA0060.2/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGCCAATSGA------
TGGACCAATCAGCACTCT
 A C G T A C G T C G T A A C T G A G T C A G T C C G T A C T G A A C G T T A G C T C A G T G C A A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T