Information for 1-GMACAAARGWGCK (Motif 5)

A C T G G T A C G T C A A T G C C G T A C G T A C G T A C T G A A C T G C G T A A C T G A G T C A C G T
Reverse Opposite:
G T C A A C T G A G T C C G A T A G T C A G C T A C G T A C G T A C G T A T C G A C G T A C T G A G T C
p-value:1e-11
log p-value:-2.639e+01
Information Content per bp:1.872
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.7 +/- 22.7bp
Average Position of motif in Background71.1 +/- 17.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GMACAAARGWGCK
AAAACAAAGG----
 A C G T A C T G G T A C G T C A A T G C C G T A C G T A C G T A C T G A A C T G C G T A A C T G A G T C A C G T
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:2
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GMACAAARGWGCK
GGAACAAAGR----
 A C G T A C T G G T A C G T C A A T G C C G T A C G T A C G T A C T G A A C T G C G T A A C T G A G T C A C G T
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----GMACAAARGWGCK
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T A C T G G T A C G T C A A T G C C G T A C G T A C G T A C T G A A C T G C G T A A C T G A G T C A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GMACAAARGWGCK
-RACAAWGG----
 A C T G G T A C G T C A A T G C C G T A C G T A C G T A C T G A A C T G C G T A A C T G A G T C A C G T
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GMACAAARGWGCK
-AACAAAGG----
 A C T G G T A C G T C A A T G C C G T A C G T A C G T A C T G A A C T G C G T A A C T G A G T C A C G T
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:6
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----GMACAAARGWGCK
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T A C T G G T A C G T C A A T G C C G T A C G T A C G T A C T G A A C T G C G T A A C T G A G T C A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GMACAAARGWGCK
GAACAATGGN---
 A C T G G T A C G T C A A T G C C G T A C G T A C G T A C T G A A C T G C G T A A C T G A G T C A C G T
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GMACAAARGWGCK
VRRACAAWGG----
 A C G T A C T G G T A C G T C A A T G C C G T A C G T A C G T A C T G A A C T G C G T A A C T G A G T C A C G T
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GMACAAARGWGCK
RAACAATGGN---
 A C T G G T A C G T C A A T G C C G T A C G T A C G T A C T G A A C T G C G T A A C T G A G T C A C G T
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GMACAAARGWGCK
RNAACAATGG----
 A C G T A C T G G T A C G T C A A T G C C G T A C G T A C G T A C T G A A C T G C G T A A C T G A G T C A C G T
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T A C G T A C G T