Information for 2-TGTAGTTTTAATGTAT (Motif 4)

A C G T T A C G C G A T C T G A A T C G C A G T A C G T A C G T A C G T C G T A G T C A A C G T C T A G A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T G T C A A G T C C G T A C A G T C G A T C G T A C G T A C G T A G T C A A T G C G A C T C G T A A G T C G T C A
p-value:1e-11
log p-value:-2.681e+01
Information Content per bp:1.743
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.4 +/- 25.6bp
Average Position of motif in Background59.3 +/- 16.2bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3a/MA0151.1/Jaspar

Match Rank:1
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:TGTAGTTTTAATGTAT
------TTTAAT----
 A C G T T A C G C G A T C T G A A T C G C A G T A C G T A C G T A C G T C G T A G T C A A C G T C T A G A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGTAGTTTTAATGTAT-
NTNAATTTTATTGNATT
 A C G T T A C G C G A T C T G A A T C G C A G T A C G T A C G T A C G T C G T A G T C A A C G T C T A G A C G T C G T A A C G T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:3
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TGTAGTTTTAATGTAT--
--NGANTTTTATGGCTCN
 A C G T T A C G C G A T C T G A A T C G C A G T A C G T A C G T A C G T C G T A G T C A A C G T C T A G A C G T C G T A A C G T A C G T A C G T
A C G T A C G T G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

HOXA13/MA0650.1/Jaspar

Match Rank:4
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:TGTAGTTTTAATGTAT
----TTTTTATTGG--
 A C G T T A C G C G A T C T G A A T C G C A G T A C G T A C G T A C G T C G T A G T C A A C G T C T A G A C G T C G T A A C G T
A C G T A C G T A C G T A C G T C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TGTAGTTTTAATGTAT-
-NNANTTTTATTGGNNN
 A C G T T A C G C G A T C T G A A T C G C A G T A C G T A C G T A C G T C G T A G T C A A C G T C T A G A C G T C G T A A C G T A C G T
A C G T C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

HOXB13/MA0901.1/Jaspar

Match Rank:6
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:TGTAGTTTTAATGTAT
----NTTTTATTGG--
 A C G T T A C G C G A T C T G A A T C G C A G T A C G T A C G T A C G T C G T A G T C A A C G T C T A G A C G T C G T A A C G T
A C G T A C G T A C G T A C G T C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TGTAGTTTTAATGTAT-
-NNAATTTTATTGGNTN
 A C G T T A C G C G A T C T G A A T C G C A G T A C G T A C G T A C G T C G T A G T C A A C G T C T A G A C G T C G T A A C G T A C G T
A C G T A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TGTAGTTTTAATGTAT--
-NNNNNATTGATGNGTGN
 A C G T T A C G C G A T C T G A A T C G C A G T A C G T A C G T A C G T C G T A G T C A A C G T C T A G A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

PB0148.1_Mtf1_2/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TGTAGTTTTAATGTAT
--NNTTTTTCTTATNT
 A C G T T A C G C G A T C T G A A T C G C A G T A C G T A C G T A C G T C G T A G T C A A C G T C T A G A C G T C G T A A C G T
A C G T A C G T A C T G G C A T A C G T C G A T C G A T C G A T C A G T G T A C C G A T C G A T G T C A C G A T G C A T C A G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGTAGTTTTAATGTAT
NNTTTTGTTTTGATNT--
 A C G T A C G T A C G T T A C G C G A T C T G A A T C G C A G T A C G T A C G T A C G T C G T A G T C A A C G T C T A G A C G T C G T A A C G T
C A G T C A T G G A C T C A G T G C A T G C A T T C A G A C G T C A G T C G A T C A G T C T A G G C T A G C A T G C T A C G A T A C G T A C G T