Information for 6-CTGCCTATCA (Motif 25)

A G T C C G A T A T C G A G T C A T G C C A G T G C T A A C G T A T G C C G T A
Reverse Opposite:
A C G T A T C G G T C A C G A T G T C A A T C G C T A G A T G C C G T A A C T G
p-value:1e-8
log p-value:-1.882e+01
Information Content per bp:1.846
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.85%
Number of Background Sequences with motif66.5
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets31.2 +/- 19.5bp
Average Position of motif in Background47.4 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CTGCCTATCA-
NCTGTCAATCAN
 A C G T A G T C C G A T A T C G A G T C A T G C C A G T G C T A A C G T A T G C C G T A A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CTGCCTATCA-
SCTGTCAVTCAV
 A C G T A G T C C G A T A T C G A G T C A T G C C A G T G C T A A C G T A T G C C G T A A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CTGCCTATCA
GSCTGTCACTCA
 A C G T A C G T A G T C C G A T A T C G A G T C A T G C C A G T G C T A A C G T A T G C C G T A
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

PB0022.1_Gata5_1/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CTGCCTATCA-----
NTNTTCTTATCAGTNTN
 A C G T A C G T A G T C C G A T A T C G A G T C A T G C C A G T G C T A A C G T A T G C C G T A A C G T A C G T A C G T A C G T A C G T
G C T A G C A T G T A C A G C T A G C T A T G C C G A T C G A T C G T A A C G T A G T C C G T A T C A G G A C T G C A T G C A T C G T A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTGCCTATCA---
CTGTCTGTCACCT
 A G T C C G A T A T C G A G T C A T G C C A G T G C T A A C G T A T G C C G T A A C G T A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Dux/MA0611.1/Jaspar

Match Rank:6
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CTGCCTATCA-
---CCAATCAA
 A G T C C G A T A T C G A G T C A T G C C A G T G C T A A C G T A T G C C G T A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

NFYB/MA0502.1/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CTGCCTATCA-
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A G T C C G A T A T C G A G T C A T G C C A G T G C T A A C G T A T G C C G T A A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

MEIS2/MA0774.1/Jaspar

Match Rank:8
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CTGCCTATCA-
---GCTGTCAA
 A G T C C G A T A T C G A G T C A T G C C A G T G C T A A C G T A T G C C G T A A C G T
A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

PB0105.1_Arid3a_2/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTGCCTATCA-----
ACCCGTATCAAATTT
 A G T C C G A T A T C G A G T C A T G C C A G T G C T A A C G T A T G C C G T A A C G T A C G T A C G T A C G T A C G T
G T C A G T A C T G A C T A G C T C A G A G C T T C G A A G C T T A G C C T G A C G T A T C G A C G A T G A C T C A G T

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CTGCCTATCA
ACTAGCCAATCA
 A C G T A C G T A G T C C G A T A T C G A G T C A T G C C A G T G C T A A C G T A T G C C G T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A