Information for 3-TGAGGGTATTCATACA (Motif 7)

C A G T A C T G C G T A C T A G A T C G C T A G C G A T C G T A C G A T C G A T A G T C C G T A A G C T C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T C T G A A C G T C T A G G C T A C G T A C G A T C G T A A G T C A T G C A G T C A C G T G T A C G T C A
p-value:1e-10
log p-value:-2.522e+01
Information Content per bp:1.887
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.76%
Number of Background Sequences with motif25.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets54.9 +/- 17.9bp
Average Position of motif in Background39.7 +/- 23.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0170.1_Sox17_2/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TGAGGGTATTCATACA--
-GACCACATTCATACAAT
 C A G T A C T G C G T A C T A G A T C G C T A G C G A T C G T A C G A T C G A T A G T C C G T A A G C T C G T A A G T C C G T A A C G T A C G T
A C G T T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TGAGGGTATTCATACA
---GHATATKCAT---
 C A G T A C T G C G T A C T A G A T C G C T A G C G A T C G T A C G A T C G A T A G T C C G T A A G C T C G T A A G T C C G T A
A C G T A C G T A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T A C G T

PB0198.1_Zfp128_2/Jaspar

Match Rank:3
Score:0.57
Offset:4
Orientation:forward strand
Alignment:TGAGGGTATTCATACA--
----TGTATATATATACC
 C A G T A C T G C G T A C T A G A T C G C T A G C G A T C G T A C G A T C G A T A G T C C G T A A G C T C G T A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C A G T C A T G G C A T C T G A G C A T C T G A G A C T C G T A G A C T C G T A G A C T C G T A T G A C A T G C

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TGAGGGTATTCATACA
---GAATATTCAT---
 C A G T A C T G C G T A C T A G A T C G C T A G C G A T C G T A C G A T C G A T A G T C C G T A A G C T C G T A A G T C C G T A
A C G T A C G T A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:5
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:TGAGGGTATTCATACA----
----NNCATTCATTCATNNN
 C A G T A C T G C G T A C T A G A T C G C T A G C G A T C G T A C G A T C G A T A G T C C G T A A G C T C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:6
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:TGAGGGTATTCATACA----
-----ATTTGCATACAATGG
 C A G T A C T G C G T A C T A G A T C G C T A G C G A T C G T A C G A T C G A T A G T C C G T A A G C T C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

PB0096.1_Zfp187_1/Jaspar

Match Rank:7
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:TGAGGGTATTCATACA---
-----TTATTAGTACATAN
 C A G T A C T G C G T A C T A G A T C G C T A G C G A T C G T A C G A T C G A T A G T C C G T A A G C T C G T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T C G A T C G T A G A C T C G A T T C G A C T A G G A C T G C T A A G T C C T G A A G C T C T G A T C G A

DMRT3/MA0610.1/Jaspar

Match Rank:8
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:TGAGGGTATTCATACA--
-------NTTGATACATT
 C A G T A C T G C G T A C T A G A T C G C T A G C G A T C G T A C G A T C G A T A G T C C G T A A G C T C G T A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:9
Score:0.52
Offset:5
Orientation:forward strand
Alignment:TGAGGGTATTCATACA---
-----ACATTCATGACACG
 C A G T A C T G C G T A C T A G A T C G C T A G C G A T C G T A C G A T C G A T A G T C C G T A A G C T C G T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PH0129.1_Otx1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:TGAGGGTATTCATACA-
AGAGGGGATTAATTTAT
 C A G T A C T G C G T A C T A G A T C G C T A G C G A T C G T A C G A T C G A T A G T C C G T A A G C T C G T A A G T C C G T A A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T