Information for 9-TAAKCACATAMTC (Motif 19)

A G C T C G T A C G T A A C T G A G T C C G T A A G T C C G T A A C G T C T G A G T A C A C G T G T A C
Reverse Opposite:
A C T G C G T A A C T G G A C T G T C A C G A T A C T G A C G T T A C G T G A C C G A T A C G T C T G A
p-value:1e-8
log p-value:-2.028e+01
Information Content per bp:1.776
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.18%
Number of Background Sequences with motif10.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets33.8 +/- 28.8bp
Average Position of motif in Background45.5 +/- 33.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TAAKCACATAMTC
-AAGCACTTAA--
 A G C T C G T A C G T A A C T G A G T C C G T A A G T C C G T A A C G T C T G A G T A C A C G T G T A C
A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T

PH0112.1_Nkx2-3/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TAAKCACATAMTC
CTTTAAGTACTTAATG
 A C G T A C G T A C G T A G C T C G T A C G T A A C T G A G T C C G T A A G T C C G T A A C G T C T G A G T A C A C G T G T A C
G A T C A G C T A G C T G C A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C T G A G A C T C T A G

FOXB1/MA0845.1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TAAKCACATAMTC
ATATTTACATA---
 A C G T A G C T C G T A C G T A A C T G A G T C C G T A A G T C C G T A A C G T C T G A G T A C A C G T G T A C
C G T A G A C T T C G A C G A T C G A T A C G T C T G A G A T C G C T A G A C T C G T A A C G T A C G T A C G T

PH0117.1_Nkx3-1/Jaspar

Match Rank:4
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TAAKCACATAMTC
NATTTAAGTACTTANNA
 A C G T A C G T A C G T A C G T A G C T C G T A C G T A A C T G A G T C C G T A A G T C C G T A A C G T C T G A G T A C A C G T G T A C
T A G C G C T A C G A T G A C T C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T A G G C A T G C T A

PH0004.1_Nkx3-2/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TAAKCACATAMTC--
CATAACCACTTAACAAC
 A C G T A C G T A G C T C G T A C G T A A C T G A G T C C G T A A G T C C G T A A C G T C T G A G T A C A C G T G T A C A C G T A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

PB0208.1_Zscan4_2/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TAAKCACATAMTC--
CGAAGCACACAAAATA
 A C G T A G C T C G T A C G T A A C T G A G T C C G T A A G T C C G T A A C G T C T G A G T A C A C G T G T A C A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PH0053.1_Hoxa6/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----TAAKCACATAMTC
AAGGTAATTACCTAAT-
 A C G T A C G T A C G T A C G T A G C T C G T A C G T A A C T G A G T C C G T A A G T C C G T A A C G T C T G A G T A C A C G T G T A C
T C G A G T C A C T A G C A T G G A C T G T C A G C T A C A G T C A G T C T G A T G A C G A T C G A C T G T C A C G T A C A G T A C G T

PH0023.1_Dlx4/Jaspar

Match Rank:8
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------TAAKCACATAMTC
GCGCTATAATTACCGAC--
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G T A C G T A A C T G A G T C C G T A A G T C C G T A A C G T C T G A G T A C A C G T G T A C
A C G T G T A C T C A G T G A C C A G T C T G A G A C T C G T A C G T A C G A T A C G T C T G A G T A C G T A C T A C G G C T A G T A C A C G T A C G T

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TAAKCACATAMTC
TAATCAATTA---
 A G C T C G T A C G T A A C T G A G T C C G T A A G T C C G T A A C G T C T G A G T A C A C G T G T A C
C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:10
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TAAKCACATAMTC
--ACCACTTAA--
 A G C T C G T A C G T A A C T G A G T C C G T A A G T C C G T A A C G T C T G A G T A C A C G T G T A C
A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T