Information for 7-GCAAAGAACCATGTCA (Motif 15)

A C T G A G T C C G T A C G T A C T G A C T A G C T G A C G T A A G T C A G T C C G T A A C G T A C T G A C G T A G T C C G T A
Reverse Opposite:
C G A T A C T G C G T A G T A C G T C A C G A T A C T G A C T G A C G T A G C T A G T C A G C T C G A T A C G T A C T G G T A C
p-value:1e-9
log p-value:-2.090e+01
Information Content per bp:1.880
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.18%
Number of Background Sequences with motif9.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets57.2 +/- 20.3bp
Average Position of motif in Background59.1 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GCAAAGAACCATGTCA
GCAGCCAAGCGTGACN
 A C T G A G T C C G T A C G T A C T G A C T A G C T G A C G T A A G T C A G T C C G T A A C G T A C T G A C G T A G T C C G T A
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

MEIS3/MA0775.1/Jaspar

Match Rank:2
Score:0.53
Offset:9
Orientation:reverse strand
Alignment:GCAAAGAACCATGTCA-
---------CCTGTCAA
 A C T G A G T C C G T A C G T A C T G A C T A G C T G A C G T A A G T C A G T C C G T A A C G T A C T G A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

MEIS1/MA0498.2/Jaspar

Match Rank:3
Score:0.53
Offset:10
Orientation:reverse strand
Alignment:GCAAAGAACCATGTCA-
----------NTGTCAN
 A C T G A G T C C G T A C G T A C T G A C T A G C T G A C G T A A G T C A G T C C G T A A C G T A C T G A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.52
Offset:6
Orientation:forward strand
Alignment:GCAAAGAACCATGTCA
------AAYTAGGTCA
 A C T G A G T C C G T A C G T A C T G A C T A G C T G A C G T A A G T C A G T C C G T A A C G T A C T G A C G T A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:5
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GCAAAGAACCATGTCA
SCAGYCADGCATGAC-
 A C T G A G T C C G T A C G T A C T G A C T A G C T G A C G T A A G T C A G T C C G T A A C G T A C T G A C G T A G T C C G T A
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T

RORA/MA0071.1/Jaspar

Match Rank:6
Score:0.51
Offset:6
Orientation:forward strand
Alignment:GCAAAGAACCATGTCA
------ATCAAGGTCA
 A C T G A G T C C G T A C G T A C T G A C T A G C T G A C G T A A G T C A G T C C G T A A C G T A C T G A C G T A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A

PB0200.1_Zfp187_2/Jaspar

Match Rank:7
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GCAAAGAACCATGTCA-
-NNAGGGACAAGGGCNC
 A C T G A G T C C G T A C G T A C T G A C T A G C T G A C G T A A G T C A G T C C G T A A C G T A C T G A C G T A G T C C G T A A C G T
A C G T A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

PAX5/MA0014.2/Jaspar

Match Rank:8
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----GCAAAGAACCATGTCA
GAGGGCAGCCAAGCGTGAC-
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A C T G A C T A G C T G A C G T A A G T C A G T C C G T A A C G T A C T G A C G T A G T C C G T A
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C A C G T

XBP1/MA0844.1/Jaspar

Match Rank:9
Score:0.50
Offset:4
Orientation:forward strand
Alignment:GCAAAGAACCATGTCA--
----AATGCCACGTCATC
 A C T G A G T C C G T A C G T A C T G A C T A G C T G A C G T A A G T C A G T C C G T A A C G T A C T G A C G T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C T G A A C G T C A T G G T A C A G T C C T G A G A T C C T A G A G C T T G A C C T G A A C G T A G T C

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.49
Offset:11
Orientation:forward strand
Alignment:GCAAAGAACCATGTCA---
-----------TGTCANYT
 A C T G A G T C C G T A C G T A C T G A C T A G C T G A C G T A A G T C A G T C C G T A A C G T A C T G A C G T A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T