Information for 1-YCTRSCYAAWTKWAAW (Motif 1)

A G C T A G T C A C G T C T A G A T G C A G T C A G T C C G T A C G T A G C T A A C G T A C G T C G A T C G T A C G T A C G T A
Reverse Opposite:
C G A T A C G T C G A T C G T A G T C A C G T A C G A T A C G T A C G T C T A G A C T G A T C G A G T C C G T A A C T G C T G A
p-value:1e-12
log p-value:-2.986e+01
Information Content per bp:1.801
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.18%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.0 +/- 30.2bp
Average Position of motif in Background54.3 +/- 1.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:YCTRSCYAAWTKWAAW
-------NATTCAAAT
 A G C T A G T C A C G T C T A G A T G C A G T C A G T C C G T A C G T A G C T A A C G T A C G T C G A T C G T A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

PB0064.1_Sox14_1/Jaspar

Match Rank:2
Score:0.54
Offset:4
Orientation:forward strand
Alignment:YCTRSCYAAWTKWAAW----
----GCTAATTATAATTATC
 A G C T A G T C A C G T C T A G A T G C A G T C A G T C C G T A C G T A G C T A A C G T A C G T C G A T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G G A T C G A C T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C A G T G T A C

PB0186.1_Tcf3_2/Jaspar

Match Rank:3
Score:0.54
Offset:2
Orientation:forward strand
Alignment:YCTRSCYAAWTKWAAW-
--AGCCGAAAAAAAAAT
 A G C T A G T C A C G T C T A G A T G C A G T C A G T C C G T A C G T A G C T A A C G T A C G T C G A T C G T A C G T A C G T A A C G T
A C G T A C G T C T G A T A C G A T G C T A G C A C T G C G T A C T G A G C T A G C T A G C T A T G C A G C T A T C G A G C T A G C A T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:4
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--YCTRSCYAAWTKWAAW
ACCGTGACTAATTNN---
 A C G T A C G T A G C T A G T C A C G T C T A G A T G C A G T C A G T C C G T A C G T A G C T A A C G T A C G T C G A T C G T A C G T A C G T A
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A A C G T A C G T A C G T

PH0127.1_Nobox/Jaspar

Match Rank:5
Score:0.52
Offset:1
Orientation:forward strand
Alignment:YCTRSCYAAWTKWAAW--
-CGCGCTAATTAGGTATC
 A G C T A G T C A C G T C T A G A T G C A G T C A G T C C G T A C G T A G C T A A C G T A C G T C G A T C G T A C G T A C G T A A C G T A C G T
A C G T T A G C A T C G A T G C T C A G A G T C G A C T C T G A C G T A G C A T A G C T C T G A T C A G A C T G G C A T C G T A G A C T A T G C

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:YCTRSCYAAWTKWAAW---
---TGCCAAAATAAACANN
 A G C T A G T C A C G T C T A G A T G C A G T C A G T C C G T A C G T A G C T A A C G T A C G T C G A T C G T A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

PB0169.1_Sox15_2/Jaspar

Match Rank:7
Score:0.51
Offset:5
Orientation:forward strand
Alignment:YCTRSCYAAWTKWAAW----
-----TTGAATGAAATTCGA
 A G C T A G T C A C G T C T A G A T G C A G T C A G T C C G T A C G T A G C T A A C G T A C G T C G A T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G C T G A G T C A A G C T A C T G C G T A G T C A C T G A C A G T G A C T G A T C T A C G T C G A

PB0079.1_Sry_1/Jaspar

Match Rank:8
Score:0.51
Offset:4
Orientation:forward strand
Alignment:YCTRSCYAAWTKWAAW----
----TATAATTATAATATTC
 A G C T A G T C A C G T C T A G A T G C A G T C A G T C C G T A C G T A G C T A A C G T A C G T C G A T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C

PH0111.1_Nkx2-2/Jaspar

Match Rank:9
Score:0.51
Offset:1
Orientation:forward strand
Alignment:YCTRSCYAAWTKWAAW--
-ATAACCACTTGAAAATT
 A G C T A G T C A C G T C T A G A T G C A G T C A G T C C G T A C G T A G C T A A C G T A C G T C G A T C G T A C G T A C G T A A C G T A C G T
A C G T G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

VSX2/MA0726.1/Jaspar

Match Rank:10
Score:0.50
Offset:5
Orientation:forward strand
Alignment:YCTRSCYAAWTKWAAW
-----CTAATTAG---
 A G C T A G T C A C G T C T A G A T G C A G T C A G T C C G T A C G T A G C T A A C G T A C G T C G A T C G T A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G A C G T A C G T A C G T