Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 729)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 47230)	% of Background Sequences with Motif
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-23	-5.349e+01	0.0000	39.0	5.35%	288.1	0.61%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-22	-5.253e+01	0.0000	45.0	6.17%	417.3	0.89%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-21	-5.007e+01	0.0000	61.0	8.37%	850.8	1.81%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-21	-4.948e+01	0.0000	56.0	7.68%	723.5	1.54%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-20	-4.765e+01	0.0000	51.0	7.00%	620.3	1.32%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-19	-4.578e+01	0.0000	54.0	7.41%	729.3	1.55%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-17	-4.113e+01	0.0000	61.0	8.37%	1025.3	2.18%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-16	-3.860e+01	0.0000	55.0	7.54%	893.1	1.90%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-16	-3.847e+01	0.0000	30.0	4.12%	248.2	0.53%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-16	-3.772e+01	0.0000	28.0	3.84%	216.3	0.46%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-15	-3.659e+01	0.0000	16.0	2.19%	47.9	0.10%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-12	-2.954e+01	0.0000	15.0	2.06%	62.3	0.13%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-10	-2.511e+01	0.0000	25.0	3.43%	289.9	0.62%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-10	-2.509e+01	0.0000	13.0	1.78%	57.2	0.12%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-5	-1.322e+01	0.0000	51.0	7.00%	1607.4	3.41%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-5	-1.303e+01	0.0000	37.0	5.08%	1010.1	2.14%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-5	-1.287e+01	0.0001	42.0	5.76%	1229.4	2.61%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-5	-1.193e+01	0.0001	95.0	13.03%	3867.2	8.21%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-5	-1.183e+01	0.0001	70.0	9.60%	2603.9	5.53%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-5	-1.169e+01	0.0002	13.0	1.78%	183.4	0.39%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-4	-1.124e+01	0.0002	57.0	7.82%	2014.9	4.28%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-4	-1.062e+01	0.0004	61.0	8.37%	2255.7	4.79%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-4	-1.039e+01	0.0005	33.0	4.53%	967.7	2.06%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-4	-1.038e+01	0.0005	85.0	11.66%	3498.0	7.43%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-4	-1.018e+01	0.0006	71.0	9.74%	2794.4	5.93%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-4	-9.873e+00	0.0007	20.0	2.74%	461.7	0.98%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-4	-9.843e+00	0.0007	41.0	5.62%	1355.0	2.88%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-4	-9.533e+00	0.0009	37.0	5.08%	1191.6	2.53%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-4	-9.289e+00	0.0012	34.0	4.66%	1070.6	2.27%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-3	-9.052e+00	0.0014	26.0	3.57%	734.4	1.56%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-3	-8.879e+00	0.0016	13.0	1.78%	242.7	0.52%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-3	-8.814e+00	0.0017	38.0	5.21%	1282.1	2.72%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-3	-8.613e+00	0.0020	11.0	1.51%	184.2	0.39%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-3	-8.173e+00	0.0030	42.0	5.76%	1517.8	3.22%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-3	-8.155e+00	0.0030	20.0	2.74%	526.5	1.12%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-3	-8.116e+00	0.0030	35.0	4.80%	1188.2	2.52%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-3	-7.594e+00	0.0050	11.0	1.51%	208.3	0.44%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-3	-7.156e+00	0.0075	41.0	5.62%	1548.5	3.29%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-3	-7.051e+00	0.0081	25.0	3.43%	795.6	1.69%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-2	-6.847e+00	0.0097	89.0	12.21%	4130.4	8.77%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-2	-6.790e+00	0.0100	56.0	7.68%	2349.3	4.99%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-2	-6.707e+00	0.0106	88.0	12.07%	4094.4	8.69%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-2	-6.406e+00	0.0140	24.0	3.29%	788.4	1.67%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-2	-6.325e+00	0.0148	28.0	3.84%	980.1	2.08%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-2	-6.098e+00	0.0182	32.0	4.39%	1190.1	2.53%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-2	-5.890e+00	0.0219	15.0	2.06%	419.9	0.89%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-2	-5.890e+00	0.0219	46.0	6.31%	1920.4	4.08%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-2	-5.640e+00	0.0269	45.0	6.17%	1894.4	4.02%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-2	-5.356e+00	0.0351	29.0	3.98%	1102.2	2.34%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-2	-5.311e+00	0.0359	32.0	4.39%	1256.5	2.67%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-2	-5.253e+00	0.0373	35.0	4.80%	1414.4	3.00%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-2	-5.243e+00	0.0373	14.0	1.92%	407.2	0.86%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-2	-5.100e+00	0.0419	46.0	6.31%	2007.8	4.26%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-2	-5.025e+00	0.0443	10.0	1.37%	251.8	0.53%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-2	-4.915e+00	0.0486	13.0	1.78%	380.5	0.81%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-2	-4.829e+00	0.0520	9.0	1.23%	219.1	0.47%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-2	-4.828e+00	0.0520	20.0	2.74%	704.5	1.50%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-2	-4.653e+00	0.0598	127.0	17.42%	6710.0	14.25%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-4.472e+00	0.0705	50.0	6.86%	2303.6	4.89%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-4.460e+00	0.0705	58.0	7.96%	2748.1	5.84%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-4.362e+00	0.0761	50.0	6.86%	2318.6	4.92%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-4.334e+00	0.0770	11.0	1.51%	322.1	0.68%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-1	-4.297e+00	0.0787	33.0	4.53%	1407.1	2.99%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-1	-4.184e+00	0.0854	2.0	0.27%	12.6	0.03%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-1	-4.184e+00	0.0854	2.0	0.27%	12.8	0.03%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-1	-4.180e+00	0.0854	48.0	6.58%	2233.1	4.74%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-1	-4.176e+00	0.0854	1.0	0.14%	1.1	0.00%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-1	-4.034e+00	0.0948	2.0	0.27%	13.7	0.03%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-1	-3.935e+00	0.1031	94.0	12.89%	4913.2	10.43%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-3.851e+00	0.1105	38.0	5.21%	1728.7	3.67%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-1	-3.810e+00	0.1135	11.0	1.51%	349.2	0.74%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-1	-3.807e+00	0.1135	62.0	8.50%	3079.6	6.54%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-1	-3.700e+00	0.1233	75.0	10.29%	3849.2	8.17%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-1	-3.555e+00	0.1406	31.0	4.25%	1385.3	2.94%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-3.474e+00	0.1505	23.0	3.16%	968.5	2.06%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-3.464e+00	0.1505	76.0	10.43%	3955.8	8.40%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-1	-3.453e+00	0.1505	5.0	0.69%	112.4	0.24%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-1	-3.433e+00	0.1507	2.0	0.27%	18.8	0.04%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-1	-3.430e+00	0.1507	117.0	16.05%	6403.8	13.60%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-1	-3.398e+00	0.1522	8.0	1.10%	237.2	0.50%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-3.372e+00	0.1543	89.0	12.21%	4742.1	10.07%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-3.329e+00	0.1591	42.0	5.76%	2023.3	4.30%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-3.257e+00	0.1689	20.0	2.74%	833.2	1.77%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-3.248e+00	0.1689	28.0	3.84%	1260.6	2.68%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-1	-3.222e+00	0.1708	27.0	3.70%	1209.9	2.57%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-1	-3.211e+00	0.1708	12.0	1.65%	433.9	0.92%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-1	-3.180e+00	0.1740	107.0	14.68%	5866.7	12.46%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-1	-3.119e+00	0.1828	140.0	19.20%	7888.9	16.75%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-1	-3.116e+00	0.1828	129.0	17.70%	7217.0	15.33%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-1	-3.101e+00	0.1828	13.0	1.78%	490.2	1.04%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-3.020e+00	0.1951	6.0	0.82%	168.8	0.36%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-1	-3.019e+00	0.1951	35.0	4.80%	1677.4	3.56%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-1	-2.909e+00	0.2135	22.0	3.02%	976.7	2.07%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-1	-2.881e+00	0.2171	9.0	1.23%	311.0	0.66%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1	-2.866e+00	0.2181	28.0	3.84%	1309.8	2.78%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-1	-2.829e+00	0.2240	70.0	9.60%	3740.4	7.94%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-2.823e+00	0.2240	17.0	2.33%	719.7	1.53%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-2.727e+00	0.2430	30.0	4.12%	1440.6	3.06%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-1	-2.650e+00	0.2597	15.0	2.06%	631.2	1.34%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-2.608e+00	0.2683	5.0	0.69%	143.1	0.30%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-1	-2.589e+00	0.2706	2.0	0.27%	29.4	0.06%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-2.574e+00	0.2720	47.0	6.45%	2441.7	5.19%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-1	-2.519e+00	0.2846	64.0	8.78%	3456.5	7.34%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-1	-2.381e+00	0.3235	18.0	2.47%	821.2	1.74%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-2.369e+00	0.3243	5.0	0.69%	154.1	0.33%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-1	-2.360e+00	0.3243	17.0	2.33%	769.3	1.63%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-2.322e+00	0.3337	57.0	7.82%	3086.7	6.56%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-2.296e+00	0.3394	16.0	2.19%	722.0	1.53%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-2.286e+00	0.3394	7.0	0.96%	253.5	0.54%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-2.271e+00	0.3417	158.0	21.67%	9293.8	19.74%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-2.243e+00	0.3482	72.0	9.88%	4007.6	8.51%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-2.198e+00	0.3610	66.0	9.05%	3657.8	7.77%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-2.183e+00	0.3630	6.0	0.82%	211.4	0.45%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-2.174e+00	0.3630	13.0	1.78%	573.8	1.22%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-2.162e+00	0.3644	17.0	2.33%	793.7	1.69%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.160e+00	0.3644	4.0	0.55%	119.8	0.25%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-2.137e+00	0.3671	21.0	2.88%	1020.1	2.17%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-2.128e+00	0.3673	143.0	19.62%	8414.1	17.87%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-2.100e+00	0.3746	13.0	1.78%	581.3	1.23%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-2.076e+00	0.3804	3.0	0.41%	79.8	0.17%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-2.021e+00	0.3987	29.0	3.98%	1498.5	3.18%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.996e+00	0.4054	12.0	1.65%	538.9	1.14%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.973e+00	0.4116	40.0	5.49%	2155.3	4.58%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.939e+00	0.4221	6.0	0.82%	227.1	0.48%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.934e+00	0.4221	53.0	7.27%	2944.0	6.25%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.899e+00	0.4324	67.0	9.19%	3802.3	8.07%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.844e+00	0.4535	21.0	2.88%	1065.7	2.26%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.833e+00	0.4546	27.0	3.70%	1416.6	3.01%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.824e+00	0.4553	19.0	2.61%	953.8	2.03%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.778e+00	0.4729	42.0	5.76%	2320.5	4.93%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.768e+00	0.4742	25.0	3.43%	1311.4	2.78%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.767e+00	0.4742	2.0	0.27%	48.3	0.10%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.758e+00	0.4742	9.0	1.23%	400.7	0.85%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.710e+00	0.4915	26.0	3.57%	1381.7	2.93%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.696e+00	0.4945	11.0	1.51%	517.9	1.10%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.635e+00	0.5216	1.0	0.14%	14.1	0.03%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.635e+00	0.5216	52.0	7.13%	2965.4	6.30%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.603e+00	0.5311	68.0	9.33%	3958.2	8.41%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.596e+00	0.5311	10.0	1.37%	473.9	1.01%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.594e+00	0.5311	3.0	0.41%	100.5	0.21%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-1.588e+00	0.5311	17.0	2.33%	875.6	1.86%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.582e+00	0.5311	11.0	1.51%	531.2	1.13%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.574e+00	0.5311	13.0	1.78%	646.5	1.37%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.553e+00	0.5350	5.0	0.69%	204.6	0.43%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.544e+00	0.5362	16.0	2.19%	824.5	1.75%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.543e+00	0.5362	18.0	2.47%	941.4	2.00%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.529e+00	0.5369	8.0	1.10%	369.7	0.79%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.511e+00	0.5428	15.0	2.06%	771.7	1.64%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.504e+00	0.5431	20.0	2.74%	1066.7	2.27%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.490e+00	0.5471	5.0	0.69%	209.6	0.45%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.483e+00	0.5472	8.0	1.10%	374.1	0.79%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.421e+00	0.5784	8.0	1.10%	381.4	0.81%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.388e+00	0.5935	2.0	0.27%	62.5	0.13%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.384e+00	0.5935	4.0	0.55%	164.4	0.35%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.383e+00	0.5935	5.0	0.69%	218.3	0.46%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.364e+00	0.5967	7.0	0.96%	331.7	0.70%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.342e+00	0.6058	47.0	6.45%	2748.9	5.84%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.337e+00	0.6058	15.0	2.06%	800.7	1.70%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.317e+00	0.6134	9.0	1.23%	451.3	0.96%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.293e+00	0.6246	15.0	2.06%	808.5	1.72%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.282e+00	0.6276	4.0	0.55%	172.3	0.37%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.282e+00	0.6276	1.0	0.14%	21.0	0.04%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.280e+00	0.6276	2.0	0.27%	67.7	0.14%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.263e+00	0.6279	29.0	3.98%	1663.6	3.53%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.217e+00	0.6531	7.0	0.96%	348.8	0.74%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.212e+00	0.6531	19.0	2.61%	1065.8	2.26%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.178e+00	0.6710	13.0	1.78%	709.8	1.51%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.172e+00	0.6710	5.0	0.69%	238.5	0.51%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.172e+00	0.6710	51.0	7.00%	3056.2	6.49%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.169e+00	0.6710	10.0	1.37%	531.4	1.13%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.153e+00	0.6719	5.0	0.69%	240.4	0.51%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.140e+00	0.6768	13.0	1.78%	716.9	1.52%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.136e+00	0.6768	1.0	0.14%	26.0	0.06%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.136e+00	0.6768	43.0	5.90%	2569.2	5.46%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.125e+00	0.6768	5.0	0.69%	243.1	0.52%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.124e+00	0.6768	43.0	5.90%	2573.8	5.47%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.106e+00	0.6806	3.0	0.41%	131.9	0.28%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.101e+00	0.6806	6.0	0.82%	304.7	0.65%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.070e+00	0.6977	4.0	0.55%	191.4	0.41%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.054e+00	0.7049	10.0	1.37%	550.7	1.17%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.048e+00	0.7052	14.0	1.92%	795.7	1.69%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.036e+00	0.7099	11.0	1.51%	614.4	1.30%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.030e+00	0.7100	28.0	3.84%	1667.8	3.54%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.015e+00	0.7171	24.0	3.29%	1422.3	3.02%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.003e+00	0.7217	9.0	1.23%	498.8	1.06%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-9.981e-01	0.7217	3.0	0.41%	140.5	0.30%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-9.968e-01	0.7217	61.0	8.37%	3758.2	7.98%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-9.674e-01	0.7359	8.0	1.10%	443.3	0.94%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-9.585e-01	0.7385	67.0	9.19%	4157.7	8.83%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-9.509e-01	0.7402	13.0	1.78%	754.9	1.60%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-9.421e-01	0.7428	7.0	0.96%	387.0	0.82%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-9.373e-01	0.7428	4.0	0.55%	205.3	0.44%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-9.322e-01	0.7428	11.0	1.51%	634.8	1.35%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-9.283e-01	0.7428	2.0	0.27%	88.8	0.19%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-9.200e-01	0.7439	91.0	12.48%	5707.6	12.12%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-9.179e-01	0.7439	50.0	6.86%	3096.1	6.57%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-8.883e-01	0.7562	2.0	0.27%	91.7	0.19%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-8.883e-01	0.7562	2.0	0.27%	91.1	0.19%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-8.681e-01	0.7678	12.0	1.65%	710.7	1.51%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-8.608e-01	0.7695	172.0	23.59%	10940.6	23.23%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-8.585e-01	0.7695	13.0	1.78%	775.5	1.65%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-8.531e-01	0.7695	4.0	0.55%	215.4	0.46%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-8.514e-01	0.7695	11.0	1.51%	651.2	1.38%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-8.501e-01	0.7695	1.0	0.14%	36.8	0.08%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-8.499e-01	0.7695	5.0	0.69%	277.5	0.59%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-8.345e-01	0.7695	21.0	2.88%	1287.8	2.73%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-8.203e-01	0.7742	58.0	7.96%	3653.6	7.76%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-8.106e-01	0.7780	7.0	0.96%	408.4	0.87%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-8.100e-01	0.7780	23.0	3.16%	1422.9	3.02%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-8.040e-01	0.7780	23.0	3.16%	1424.9	3.03%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-7.848e-01	0.7870	84.0	11.52%	5341.5	11.34%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-7.844e-01	0.7870	8.0	1.10%	476.8	1.01%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-7.645e-01	0.7956	8.0	1.10%	480.4	1.02%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-7.552e-01	0.7993	43.0	5.90%	2724.3	5.79%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-7.525e-01	0.7993	10.0	1.37%	610.3	1.30%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-7.479e-01	0.7993	4.0	0.55%	229.2	0.49%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-7.405e-01	0.7999	125.0	17.15%	8011.7	17.01%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-7.065e-01	0.8238	2.0	0.27%	107.9	0.23%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-6.875e-01	0.8358	57.0	7.82%	3662.1	7.78%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-6.845e-01	0.8358	17.0	2.33%	1079.7	2.29%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-6.829e-01	0.8358	3.0	0.41%	174.5	0.37%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-6.811e-01	0.8358	43.0	5.90%	2761.6	5.86%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-6.793e-01	0.8358	5.0	0.69%	304.3	0.65%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-6.791e-01	0.8358	86.0	11.80%	5541.5	11.77%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-6.732e-01	0.8358	67.0	9.19%	4317.9	9.17%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-6.718e-01	0.8358	36.0	4.94%	2313.6	4.91%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-6.595e-01	0.8358	1.0	0.14%	47.1	0.10%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-6.578e-01	0.8358	16.0	2.19%	1023.5	2.17%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-6.516e-01	0.8358	18.0	2.47%	1155.0	2.45%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-6.467e-01	0.8358	9.0	1.23%	571.5	1.21%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-6.416e-01	0.8358	8.0	1.10%	507.9	1.08%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-6.407e-01	0.8358	2.0	0.27%	114.7	0.24%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-6.404e-01	0.8358	18.0	2.47%	1159.8	2.46%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-6.319e-01	0.8358	2.0	0.27%	115.9	0.25%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-6.314e-01	0.8358	1.0	0.14%	49.5	0.11%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-6.179e-01	0.8358	1.0	0.14%	50.9	0.11%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.147e-01	0.8358	2.0	0.27%	117.0	0.25%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.147e-01	0.8358	2.0	0.27%	117.0	0.25%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-5.997e-01	0.8361	40.0	5.49%	2610.7	5.54%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-5.949e-01	0.8366	50.0	6.86%	3264.3	6.93%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-5.775e-01	0.8478	8.0	1.10%	523.3	1.11%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-5.561e-01	0.8625	1.0	0.14%	55.6	0.12%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-5.513e-01	0.8631	8.0	1.10%	530.1	1.13%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-5.483e-01	0.8631	21.0	2.88%	1392.2	2.96%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-5.435e-01	0.8631	17.0	2.33%	1131.0	2.40%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-5.289e-01	0.8719	7.0	0.96%	469.8	1.00%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-5.271e-01	0.8719	38.0	5.21%	2521.5	5.35%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-5.191e-01	0.8734	15.0	2.06%	1007.7	2.14%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-5.091e-01	0.8787	22.0	3.02%	1476.3	3.14%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-5.089e-01	0.8787	15.0	2.06%	1011.5	2.15%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-5.039e-01	0.8787	15.0	2.06%	1013.4	2.15%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-5.024e-01	0.8787	12.0	1.65%	813.5	1.73%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-4.966e-01	0.8787	22.0	3.02%	1482.2	3.15%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-4.957e-01	0.8787	21.0	2.88%	1416.5	3.01%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-4.936e-01	0.8787	21.0	2.88%	1417.2	3.01%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-4.729e-01	0.8861	1.0	0.14%	63.8	0.14%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-4.712e-01	0.8861	13.0	1.78%	892.8	1.90%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-4.657e-01	0.8861	6.0	0.82%	418.9	0.89%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-4.627e-01	0.8861	29.0	3.98%	1965.5	4.17%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-4.619e-01	0.8861	2.0	0.27%	138.1	0.29%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-4.558e-01	0.8861	31.0	4.25%	2102.5	4.46%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-4.506e-01	0.8861	8.0	1.10%	560.9	1.19%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-4.460e-01	0.8861	26.0	3.57%	1775.8	3.77%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-4.345e-01	0.8929	13.0	1.78%	907.4	1.93%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-4.320e-01	0.8929	9.0	1.23%	635.1	1.35%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-4.306e-01	0.8929	22.0	3.02%	1516.5	3.22%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-4.273e-01	0.8929	6.0	0.82%	429.1	0.91%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-4.262e-01	0.8929	3.0	0.41%	218.0	0.46%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-4.229e-01	0.8929	13.0	1.78%	912.6	1.94%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-4.216e-01	0.8929	3.0	0.41%	218.9	0.46%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-4.048e-01	0.8961	4.0	0.55%	294.1	0.62%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-4.048e-01	0.8961	1.0	0.14%	71.1	0.15%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-3.883e-01	0.9042	40.0	5.49%	2749.0	5.84%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-3.831e-01	0.9056	2.0	0.27%	152.4	0.32%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-3.687e-01	0.9154	82.0	11.25%	5552.2	11.79%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-3.660e-01	0.9154	5.0	0.69%	377.2	0.80%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-3.478e-01	0.9281	32.0	4.39%	2243.8	4.76%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-3.462e-01	0.9281	49.0	6.72%	3385.2	7.19%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-3.411e-01	0.9281	25.0	3.43%	1774.8	3.77%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-3.277e-01	0.9367	19.0	2.61%	1373.4	2.92%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-3.237e-01	0.9372	21.0	2.88%	1513.7	3.21%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-3.143e-01	0.9427	2.0	0.27%	167.4	0.36%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-3.119e-01	0.9427	1.0	0.14%	85.8	0.18%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-3.061e-01	0.9438	6.0	0.82%	471.6	1.00%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-3.027e-01	0.9438	11.0	1.51%	831.6	1.77%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-3.002e-01	0.9438	23.0	3.16%	1667.4	3.54%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-2.993e-01	0.9438	47.0	6.45%	3297.2	7.00%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-2.971e-01	0.9438	5.0	0.69%	401.4	0.85%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-2.943e-01	0.9438	42.0	5.76%	2965.6	6.30%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-2.672e-01	0.9608	23.0	3.16%	1693.1	3.60%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.666e-01	0.9608	52.0	7.13%	3670.4	7.79%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-2.450e-01	0.9757	2.0	0.27%	186.5	0.40%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-2.443e-01	0.9757	53.0	7.27%	3765.2	8.00%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-2.275e-01	0.9862	15.0	2.06%	1164.4	2.47%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-2.236e-01	0.9867	2.0	0.27%	193.8	0.41%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-2.196e-01	0.9873	20.0	2.74%	1525.5	3.24%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-2.100e-01	0.9935	11.0	1.51%	889.3	1.89%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.035e-01	0.9966	4.0	0.55%	365.5	0.78%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.930e-01	1.0000	9.0	1.23%	754.7	1.60%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.889e-01	1.0000	3.0	0.41%	291.6	0.62%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.842e-01	1.0000	22.0	3.02%	1702.3	3.62%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.804e-01	1.0000	12.0	1.65%	986.1	2.09%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.767e-01	1.0000	3.0	0.41%	297.7	0.63%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.748e-01	1.0000	3.0	0.41%	298.0	0.63%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.702e-01	1.0000	31.0	4.25%	2353.1	5.00%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.690e-01	1.0000	3.0	0.41%	301.9	0.64%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.664e-01	1.0000	1.0	0.14%	121.4	0.26%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.661e-01	1.0000	41.0	5.62%	3055.3	6.49%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-1.562e-01	1.0000	11.0	1.51%	934.2	1.98%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.528e-01	1.0000	3.0	0.41%	310.2	0.66%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.478e-01	1.0000	3.0	0.41%	313.5	0.67%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.460e-01	1.0000	8.0	1.10%	716.8	1.52%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.419e-01	1.0000	7.0	0.96%	642.5	1.36%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.351e-01	1.0000	4.0	0.55%	406.6	0.86%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.316e-01	1.0000	16.0	2.19%	1332.6	2.83%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.296e-01	1.0000	13.0	1.78%	1112.7	2.36%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.246e-01	1.0000	14.0	1.92%	1193.1	2.53%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.103e-01	1.0000	17.0	2.33%	1436.2	3.05%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.036e-01	1.0000	77.0	10.56%	5668.6	12.04%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-9.870e-02	1.0000	7.0	0.96%	686.4	1.46%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-9.840e-02	1.0000	59.0	8.09%	4444.6	9.44%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-9.598e-02	1.0000	20.0	2.74%	1682.8	3.57%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-9.461e-02	1.0000	2.0	0.27%	259.9	0.55%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-9.191e-02	1.0000	3.0	0.41%	355.2	0.75%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-8.594e-02	1.0000	1.0	0.14%	162.0	0.34%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-7.724e-02	1.0000	27.0	3.70%	2236.2	4.75%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-6.634e-02	1.0000	47.0	6.45%	3705.4	7.87%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-6.438e-02	1.0000	7.0	0.96%	736.2	1.56%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-5.650e-02	1.0000	18.0	2.47%	1622.5	3.45%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-5.049e-02	1.0000	18.0	2.47%	1640.9	3.48%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-4.924e-02	1.0000	44.0	6.04%	3560.7	7.56%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-4.669e-02	1.0000	47.0	6.45%	3787.7	8.04%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-4.627e-02	1.0000	55.0	7.54%	4359.4	9.26%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-4.452e-02	1.0000	1.0	0.14%	202.1	0.43%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-4.245e-02	1.0000	1.0	0.14%	205.9	0.44%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-3.760e-02	1.0000	10.0	1.37%	1049.9	2.23%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-3.481e-02	1.0000	7.0	0.96%	805.5	1.71%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-3.443e-02	1.0000	62.0	8.50%	4927.7	10.46%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-3.294e-02	1.0000	1.0	0.14%	221.9	0.47%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-2.950e-02	1.0000	14.0	1.92%	1406.7	2.99%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-2.923e-02	1.0000	7.0	0.96%	824.2	1.75%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-2.298e-02	1.0000	9.0	1.23%	1024.8	2.18%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-2.292e-02	1.0000	1.0	0.14%	244.1	0.52%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-2.033e-02	1.0000	80.0	10.97%	6329.1	13.44%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.963e-02	1.0000	25.0	3.43%	2330.4	4.95%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.949e-02	1.0000	12.0	1.65%	1297.1	2.75%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.752e-02	1.0000	82.0	11.25%	6507.7	13.82%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.380e-02	1.0000	36.0	4.94%	3227.5	6.85%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.307e-02	1.0000	39.0	5.35%	3462.8	7.35%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.163e-02	1.0000	4.0	0.55%	633.3	1.34%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.025e-02	1.0000	3.0	0.41%	539.4	1.15%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-3.283e-03	1.0000	21.0	2.88%	2274.2	4.83%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-2.018e-03	1.0000	7.0	0.96%	1092.3	2.32%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-5.550e-04	1.0000	33.0	4.53%	3497.0	7.43%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	19.5	0.04%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	0.000e+00	1.0000	0.0	0.00%	78.7	0.17%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	0.000e+00	1.0000	0.0	0.00%	95.0	0.20%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	17.6	0.04%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	0.000e+00	1.0000	0.0	0.00%	166.1	0.35%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	0.000e+00	1.0000	0.0	0.00%	260.4	0.55%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	2.4	0.01%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	0.000e+00	1.0000	0.0	0.00%	67.3	0.14%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	40.5	0.09%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	11.3	0.02%