Information for 6-GTGTTAATAAGCA (Motif 9)

A T C G C G A T A C T G A C G T A C G T C G T A C G T A A C G T C T G A C T G A C T A G A T G C G T C A
Reverse Opposite:
A C G T A T C G A G T C A G C T A G C T C G T A A C G T C G A T C G T A G T C A G T A C C G T A A T G C
p-value:1e-13
log p-value:-3.162e+01
Information Content per bp:1.779
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets33.7 +/- 27.0bp
Average Position of motif in Background75.4 +/- 12.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX6-2/MA0675.1/Jaspar

Match Rank:1
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GTGTTAATAAGCA
---TTAATTAN--
 A T C G C G A T A C T G A C G T A C G T C G T A C G T A A C G T C T G A C T G A C T A G A T G C G T C A
A C G T A C G T A C G T C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G A C G T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:2
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GTGTTAATAAGCA
--GKTAATGR---
 A T C G C G A T A C T G A C G T A C G T C G T A C G T A A C G T C T G A C T G A C T A G A T G C G T C A
A C G T A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T A C G T A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GTGTTAATAAGCA
AGGTGTTAAT-----
 A C G T A C G T A T C G C G A T A C T G A C G T A C G T C G T A C G T A A C G T C T G A C T G A C T A G A T G C G T C A
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T A C G T A C G T A C G T

GSX2/MA0893.1/Jaspar

Match Rank:4
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GTGTTAATAAGCA
--NTTAATTAGN-
 A T C G C G A T A C T G A C G T A C G T C G T A C G T A A C G T C T G A C T G A C T A G A T G C G T C A
A C G T A C G T C A G T A G C T C G A T C G T A C G T A G C A T C A G T C T G A T A C G C A G T A C G T

GSX1/MA0892.1/Jaspar

Match Rank:5
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GTGTTAATAAGCA
--NNTAATTAGN-
 A T C G C G A T A C T G A C G T A C G T C G T A C G T A A C G T C T G A C T G A C T A G A T G C G T C A
A C G T A C G T C G A T A G C T G C A T C G T A C G T A A G C T C A G T C T G A T A C G C A T G A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:6
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GTGTTAATAAGCA
--TTTAATTGCN-
 A T C G C G A T A C T G A C G T A C G T C G T A C G T A A C G T C T G A C T G A C T A G A T G C G T C A
A C G T A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C A C G T

NKX6-1/MA0674.1/Jaspar

Match Rank:7
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GTGTTAATAAGCA
---TTAATTAN--
 A T C G C G A T A C T G A C G T A C G T C G T A C G T A A C G T C T G A C T G A C T A G A T G C G T C A
A C G T A C G T A C G T C G A T A G C T C G T A C G T A C A G T C A G T C T G A A T G C A C G T A C G T

PB0031.1_Hoxa3_1/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GTGTTAATAAGCA
TGGAGGTAATTAAC-
 A C G T A C G T A T C G C G A T A C T G A C G T A C G T C G T A C G T A A C G T C T G A C T G A C T A G A T G C G T C A
C A G T A C T G A T C G G C T A C T A G A T C G G A C T G T C A C G T A A C G T A C G T C T G A T C G A A G T C A C G T

POU6F2/MA0793.1/Jaspar

Match Rank:9
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GTGTTAATAAGCA
---NTAATGAGCT
 A T C G C G A T A C T G A C G T A C G T C G T A C G T A A C G T C T G A C T G A C T A G A T G C G T C A
A C G T A C G T A C G T C G T A C G A T T G C A C T G A C A G T C A T G G T C A C T A G A T G C G A C T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GTGTTAATAAGCA
--TTTTATTRGN-
 A T C G C G A T A C T G A C G T A C G T C G T A C G T A A C G T C T G A C T G A C T A G A T G C G T C A
A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T