Information for 3-CCGTCGCAAT (Motif 6)

A T G C T A G C A C T G C G A T G A T C T C A G A G T C T C G A T G C A G C A T
Reverse Opposite:
C G T A A C G T A G C T A C T G A G T C C T A G G C T A T G A C A T C G T A C G
p-value:1e-15
log p-value:-3.457e+01
Information Content per bp:1.680
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif4.25%
Number of Background Sequences with motif310.5
Percentage of Background Sequences with motif0.66%
Average Position of motif in Targets58.3 +/- 23.4bp
Average Position of motif in Background53.8 +/- 36.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0055.1_Rfx4_1/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CCGTCGCAAT---
TACCATAGCAACGGT
 A C G T A C G T A T G C T A G C A C T G C G A T G A T C T C A G A G T C T C G A T G C A G C A T A C G T A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0054.1_Rfx3_1/Jaspar

Match Rank:2
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------CCGTCGCAAT-------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C T A G C A C T G C G A T G A T C T C A G A G T C T C G A T G C A G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

PB0050.1_Osr1_1/Jaspar

Match Rank:3
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CCGTCGCAAT-
ATTTACAGTAGCAAAA
 A C G T A C G T A C G T A C G T A C G T A T G C T A G C A C T G C G A T G A T C T C A G A G T C T C G A T G C A G C A T A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

Rfx1/MA0509.1/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCGTCGCAAT
GTTGCCATGGCAAC
 A C G T A C G T A C G T A C G T A T G C T A G C A C T G C G A T G A T C T C A G A G T C T C G A T G C A G C A T
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCGTCGCAAT---
CCGCATAGCAACGGA
 A C G T A C G T A T G C T A G C A C T G C G A T G A T C T C A G A G T C T C G A T G C A G C A T A C G T A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0051.1_Osr2_1/Jaspar

Match Rank:6
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CCGTCGCAAT-
ATGTACAGTAGCAAAG
 A C G T A C G T A C G T A C G T A C G T A T G C T A G C A C T G C G A T G A T C T C A G A G T C T C G A T G C A G C A T A C G T
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

PB0179.1_Sp100_2/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCGTCGCAAT----
TCCGTCGCTTAAAAG
 A C G T A T G C T A G C A C T G C G A T G A T C T C A G A G T C T C G A T G C A G C A T A C G T A C G T A C G T A C G T
A G C T A T G C G A T C T C A G G C A T T G A C A C T G G A T C A C G T C A G T G C T A C G T A G C T A C G T A A C T G

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCGTCGCAAT
NATGTTGCAA-
 A C G T A T G C T A G C A C T G C G A T G A T C T C A G A G T C T C G A T G C A G C A T
C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A A C G T

EGR4/MA0733.1/Jaspar

Match Rank:9
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CCGTCGCAAT-
TTACGCCCACGCATTT
 A C G T A C G T A C G T A C G T A C G T A T G C T A G C A C T G C G A T G A T C T C A G A G T C T C G A T G C A G C A T A C G T
G A C T G A C T G T C A A G T C C A T G A G T C T G A C A G T C G T C A A G T C A T C G A G T C T G C A G C A T G C A T G C A T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCGTCGCAAT--
SCCTAGCAACAG
 A T G C T A G C A C T G C G A T G A T C T C A G A G T C T C G A T G C A G C A T A C G T A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G