Information for 3-GAAAGGGGGTTTTAGG (Motif 4)

A T C G G T C A G T C A C G T A C T A G A T C G A C T G A T C G C T A G A G C T A C G T A C G T C G A T C G T A A C T G C T A G
Reverse Opposite:
A G T C G T A C C G A T C G T A C G T A C G T A C T G A A G T C A T G C G T A C A T G C A G T C C G A T A C G T A C G T A T G C
p-value:1e-16
log p-value:-3.774e+01
Information Content per bp:1.762
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets33.3 +/- 25.0bp
Average Position of motif in Background47.5 +/- 5.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GRHL1/MA0647.1/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GAAAGGGGGTTTTAGG
-NAAACCGGTTTT---
 A T C G G T C A G T C A C G T A C T A G A T C G A C T G A T C G C T A G A G C T A C G T A C G T C G A T C G T A A C T G C T A G
A C G T G C T A C G T A C T G A C G T A A T G C G A T C C A T G A C T G G C A T G A C T G C A T C A G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:2
Score:0.58
Offset:7
Orientation:reverse strand
Alignment:GAAAGGGGGTTTTAGG---
-------DGWTTTATGRCN
 A T C G G T C A G T C A C G T A C T A G A T C G A C T G A T C G C T A G A G C T A C G T A C G T C G A T C G T A A C T G C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.54
Offset:8
Orientation:reverse strand
Alignment:GAAAGGGGGTTTTAGG--
--------NTTTTATGAC
 A T C G G T C A G T C A C G T A C T A G A T C G A C T G A T C G C T A G A G C T A C G T A C G T C G A T C G T A A C T G C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

CDX2/MA0465.1/Jaspar

Match Rank:4
Score:0.53
Offset:9
Orientation:reverse strand
Alignment:GAAAGGGGGTTTTAGG----
---------TTTTATGGCTN
 A T C G G T C A G T C A C G T A C T A G A T C G A C T G A T C G C T A G A G C T A C G T A C G T C G A T C G T A A C T G C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.53
Offset:9
Orientation:reverse strand
Alignment:GAAAGGGGGTTTTAGG---
---------TTTTATTRGN
 A T C G G T C A G T C A C G T A C T A G A T C G A C T G A T C G C T A G A G C T A C G T A C G T C G A T C G T A A C T G C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

HOXD13/MA0909.1/Jaspar

Match Rank:6
Score:0.53
Offset:8
Orientation:reverse strand
Alignment:GAAAGGGGGTTTTAGG--
--------NTTTTATTGG
 A T C G G T C A G T C A C G T A C T A G A T C G A C T G A T C G C T A G A G C T A C G T A C G T C G A T C G T A A C T G C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:7
Score:0.52
Offset:9
Orientation:forward strand
Alignment:GAAAGGGGGTTTTAGG---
---------TTTTATKRGG
 A T C G G T C A G T C A C G T A C T A G A T C G A C T G A T C G C T A G A G C T A C G T A C G T C G A T C G T A A C T G C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

TFCP2/MA0145.3/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GAAAGGGGGTTTTAGG
--AAACCGGTTT----
 A T C G G T C A G T C A C G T A C T A G A T C G A C T G A T C G C T A G A G C T A C G T A C G T C G A T C G T A A C T G C T A G
A C G T A C G T C T G A C T G A C G T A A T G C G A T C C T A G A T C G G C A T G C A T A G C T A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.51
Offset:9
Orientation:reverse strand
Alignment:GAAAGGGGGTTTTAGG--
---------TTTTATTGC
 A T C G G T C A G T C A C G T A C T A G A T C G A C T G A T C G C T A G A G C T A C G T A C G T C G A T C G T A A C T G C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

HOXB13/MA0901.1/Jaspar

Match Rank:10
Score:0.51
Offset:8
Orientation:reverse strand
Alignment:GAAAGGGGGTTTTAGG--
--------NTTTTATTGG
 A T C G G T C A G T C A C G T A C T A G A T C G A C T G A T C G C T A G A G C T A C G T A C G T C G A T C G T A A C T G C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G