Information for 2-CTTTACGRCA (Motif 2)

A T G C A C G T A C G T A C G T C T G A A G T C A C T G C T G A A G T C C G T A
Reverse Opposite:
A C G T A C T G G A C T A G T C A C T G A G C T C G T A C G T A T C G A A T C G
p-value:1e-25
log p-value:-5.888e+01
Information Content per bp:1.883
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.78%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.1 +/- 22.0bp
Average Position of motif in Background34.6 +/- 22.4bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0065.1_Hoxc10/Jaspar

Match Rank:1
Score:0.78
Offset:-3
Orientation:reverse strand
Alignment:---CTTTACGRCA---
ANNTTTTACGACNTNN
 A C G T A C G T A C G T A T G C A C G T A C G T A C G T C T G A A G T C A C T G C T G A A G T C C G T A A C G T A C G T A C G T
T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

PH0066.1_Hoxc11/Jaspar

Match Rank:2
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---CTTTACGRCA---
NNNTTTTACGACNTTN
 A C G T A C G T A C G T A T G C A C G T A C G T A C G T C T G A A G T C A C T G C T G A A G T C C G T A A C G T A C G T A C G T
G T A C G A C T C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C T G A

PH0047.1_Hoxa11/Jaspar

Match Rank:3
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---CTTTACGRCA---
NNGTTTTACGACTTTA
 A C G T A C G T A C G T A T G C A C G T A C G T A C G T C T G A A G T C A C T G C T G A A G T C C G T A A C G T A C G T A C G T
G T C A G A C T C T A G C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C G T A

PH0077.1_Hoxd12/Jaspar

Match Rank:4
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----CTTTACGRCA---
NNNATTTTACGACNNTN
 A C G T A C G T A C G T A C G T A T G C A C G T A C G T A C G T C T G A A G T C A C T G C T G A A G T C C G T A A C G T A C G T A C G T
G T C A C G T A C T A G C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T A G

PH0076.1_Hoxd11/Jaspar

Match Rank:5
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----CTTTACGRCA---
ANNATTTTACGACNTNA
 A C G T A C G T A C G T A C G T A T G C A C G T A C G T A C G T C T G A A G T C A C T G C T G A A G T C C G T A A C G T A C G T A C G T
G T C A C T A G C T A G C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T G A

HOXD11/MA0908.1/Jaspar

Match Rank:6
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-CTTTACGRCA
NTTTTACGAC-
 A C G T A T G C A C G T A C G T A C G T C T G A A G T C A C T G C T G A A G T C C G T A
C G A T C G A T C G A T C G A T C G A T C G T A A G T C C T A G C G T A A G T C A C G T

PH0067.1_Hoxc12/Jaspar

Match Rank:7
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----CTTTACGRCA---
GNNNTTTTACGACCTNA
 A C G T A C G T A C G T A C G T A T G C A C G T A C G T A C G T C T G A A G T C A C T G C T G A A G T C C G T A A C G T A C G T A C G T
C T A G G C T A T C G A C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C A G C T C G T A C T G A

HOXC11/MA0651.1/Jaspar

Match Rank:8
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-CTTTACGRCA
NTTTTACGACC
 A C G T A T G C A C G T A C G T A C G T C T G A A G T C A C T G C T G A A G T C C G T A
C G T A C G A T C A G T C G A T G C A T C G T A A G T C C T A G C T G A A G T C G A T C

HOXC12/MA0906.1/Jaspar

Match Rank:9
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CTTTACGRCA
NTTTTACGACC
 A C G T A T G C A C G T A C G T A C G T C T G A A G T C A C T G C T G A A G T C C G T A
C G A T C A G T C G A T G C A T C G A T T C G A A G T C C A T G C T G A A G T C G A T C

Hoxa11/MA0911.1/Jaspar

Match Rank:10
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CTTTACGRCA
ANTTTTACGACC
 A C G T A C G T A T G C A C G T A C G T A C G T C T G A A G T C A C T G C T G A A G T C C G T A
G C T A C G T A C G A T C G A T G C A T G C A T G C T A G A T C C T A G T C G A A G T C G A T C