Information for 4-GTTTGATTGC (Motif 11)

A C T G A C G T A G C T A C G T C T A G C G T A A C G T C G A T C T A G G T A C
Reverse Opposite:
C A T G G A T C C G T A C G T A C G A T A G T C C G T A C T G A C G T A A G T C
p-value:1e-9
log p-value:-2.225e+01
Information Content per bp:1.861
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif3.06%
Number of Background Sequences with motif94.7
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets45.0 +/- 19.5bp
Average Position of motif in Background48.5 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Dux/MA0611.1/Jaspar

Match Rank:1
Score:0.80
Offset:2
Orientation:reverse strand
Alignment:GTTTGATTGC
--TTGATTGN
 A C T G A C G T A G C T A C G T C T A G C G T A A C G T C G A T C T A G G T A C
A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G

Hoxd9/MA0913.1/Jaspar

Match Rank:2
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GTTTGATTGC
TTTTTATTGC
 A C T G A C G T A G C T A C G T C T A G C G T A A C G T C G A T C T A G G T A C
C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C

Arid3a/MA0151.1/Jaspar

Match Rank:3
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GTTTGATTGC
-TTTAAT---
 A C T G A C G T A G C T A C G T C T A G C G T A A C G T C G A T C T A G G T A C
A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:4
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GTTTGATTGC-
NTTTTATTACN
 A C T G A C G T A G C T A C G T C T A G C G T A A C G T C G A T C T A G G T A C A C G T
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

PBX1/MA0070.1/Jaspar

Match Rank:5
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GTTTGATTGC---
-TTTGATTGATGN
 A C T G A C G T A G C T A C G T C T A G C G T A A C G T C G A T C T A G G T A C A C G T A C G T A C G T
A C G T C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:6
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GTTTGATTGC-
-TTTAATTGCN
 A C T G A C G T A G C T A C G T C T A G C G T A A C G T C G A T C T A G G T A C A C G T
A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GTTTGATTGC
-TTTTATTGC
 A C T G A C G T A G C T A C G T C T A G C G T A A C G T C G A T C T A G G T A C
A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GTTTGATTGC
NTTTTATTGG
 A C T G A C G T A G C T A C G T C T A G C G T A A C G T C G A T C T A G G T A C
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G

PH0064.1_Hoxb9/Jaspar

Match Rank:9
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---GTTTGATTGC---
NGANTTTTATGGCTCN
 A C G T A C G T A C G T A C T G A C G T A G C T A C G T C T A G C G T A A C G T C G A T C T A G G T A C A C G T A C G T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

HOXB13/MA0901.1/Jaspar

Match Rank:10
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GTTTGATTGC
NTTTTATTGG
 A C T G A C G T A G C T A C G T C T A G C G T A A C G T C G A T C T A G G T A C
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G