Information for 21-RCTAGKTKRYARYCAS (Motif 41)

C T G A A G T C A C G T C G T A A C T G A C G T A C G T A C G T C T G A A G T C C G T A C T G A A G C T A G T C C G T A A T G C
Reverse Opposite:
A T C G A C G T A C T G C T A G A G C T A C G T C T A G A G C T G T C A C G T A G T C A A G T C A C G T C G T A A C T G A G C T
p-value:1e-6
log p-value:-1.468e+01
Information Content per bp:1.818
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.8 +/- 21.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0040.1_Hmbox1/Jaspar

Match Rank:1
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----RCTAGKTKRYARYCAS
GAAAACTAGTTAACATC---
 A C G T A C G T A C G T A C G T C T G A A G T C A C G T C G T A A C T G A C G T A C G T A C G T C T G A A G T C C G T A C T G A A G C T A G T C C G T A A T G C
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:RCTAGKTKRYARYCAS
---AGGTGNCAGACAG
 C T G A A G T C A C G T C G T A A C T G A C G T A C G T A C G T C T G A A G T C C G T A C T G A A G C T A G T C C G T A A T G C
A C G T A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

PH0168.1_Hnf1b/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---RCTAGKTKRYARYCAS
ANNNCTAGTTAACNGNN--
 A C G T A C G T A C G T C T G A A G T C A C G T C G T A A C T G A C G T A C G T A C G T C T G A A G T C C G T A C T G A A G C T A G T C C G T A A T G C
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.54
Offset:3
Orientation:forward strand
Alignment:RCTAGKTKRYARYCAS
---AGGTGHCAGACA-
 C T G A A G T C A C G T C G T A A C T G A C G T A C G T A C G T C T G A A G T C C G T A C T G A A G C T A G T C C G T A A T G C
A C G T A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

HMBOX1/MA0895.1/Jaspar

Match Rank:5
Score:0.52
Offset:0
Orientation:forward strand
Alignment:RCTAGKTKRYARYCAS
ACTAGTTAAC------
 C T G A A G T C A C G T C G T A A C T G A C G T A C G T A C G T C T G A A G T C C G T A C T G A A G C T A G T C C G T A A T G C
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T A C G T A C G T A C G T A C G T A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:6
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:RCTAGKTKRYARYCAS
---AGGTGTTAAT---
 C T G A A G T C A C G T C G T A A C T G A C G T A C G T A C G T C T G A A G T C C G T A C T G A A G C T A G T C C G T A A T G C
A C G T A C G T A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:7
Score:0.51
Offset:4
Orientation:forward strand
Alignment:RCTAGKTKRYARYCAS
----SCTGTCAVTCAV
 C T G A A G T C A C G T C G T A A C T G A C G T A C G T A C G T C T G A A G T C C G T A C T G A A G C T A G T C C G T A A T G C
A C G T A C G T A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.50
Offset:3
Orientation:forward strand
Alignment:RCTAGKTKRYARYCAS
---AGGTGTCA-----
 C T G A A G T C A C G T C G T A A C T G A C G T A C G T A C G T C T G A A G T C C G T A C T G A A G C T A G T C C G T A A T G C
A C G T A C G T A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:9
Score:0.50
Offset:8
Orientation:forward strand
Alignment:RCTAGKTKRYARYCAS
--------CCAATCAA
 C T G A A G T C A C G T C G T A A C T G A C G T A C G T A C G T C T G A A G T C C G T A C T G A A G C T A G T C C G T A A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

PB0181.1_Spdef_2/Jaspar

Match Rank:10
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--RCTAGKTKRYARYCAS
CTACTAGGATGTNNTN--
 A C G T A C G T C T G A A G T C A C G T C G T A A C T G A C G T A C G T A C G T C T G A A G T C C G T A C T G A A G C T A G T C C G T A A T G C
A G T C G C A T C G T A T G A C C G A T T C G A T A C G C A T G C G T A G A C T C T A G G A C T C G A T T C G A G C A T G A T C A C G T A C G T