Information for 23-GACCTBACTTCTT (Motif 40)

A T C G C G T A A G T C A G T C A C G T A C T G C T G A A G T C A C G T C G A T A T G C A C G T A C G T
Reverse Opposite:
C G T A C G T A A T C G C G T A C G T A A C T G A G C T T G A C G T C A A C T G A C T G A C G T A T G C
p-value:1e-6
log p-value:-1.468e+01
Information Content per bp:1.826
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.0 +/- 26.0bp
Average Position of motif in Background55.2 +/- 17.8bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GACCTBACTTCTT
TGACCTYA------
 A C G T A T C G C G T A A G T C A G T C A C G T A C T G C T G A A G T C A C G T C G A T A T G C A C G T A C G T
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GACCTBACTTCTT
TGACCT--------
 A C G T A T C G C G T A A G T C A G T C A C G T A C T G C T G A A G T C A C G T C G A T A T G C A C G T A C G T
A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GACCTBACTTCTT
TGACCTTGAT----
 A C G T A T C G C G T A A G T C A G T C A C G T A C T G C T G A A G T C A C G T C G A T A T G C A C G T A C G T
A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T A C G T A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:4
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GACCTBACTTCTT
NNGCACCTTTCTCC--
 A C G T A C G T A C G T A T C G C G T A A G T C A G T C A C G T A C T G C T G A A G T C A C G T C G A T A T G C A C G T A C G T
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C A C G T A C G T

GLI2/MA0734.1/Jaspar

Match Rank:5
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GACCTBACTTCTT
GCGACCACACTG---
 A C G T A C G T A T C G C G T A A G T C A G T C A C G T A C T G C T G A A G T C A C G T C G A T A T G C A C G T A C G T
C T A G T G A C C A T G T G C A A G T C A T G C G T C A A T G C T G C A G T A C C G A T C T A G A C G T A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:6
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----GACCTBACTTCTT
NNCNTGACCCCGCTCT--
 A C G T A C G T A C G T A C G T A C G T A T C G C G T A A G T C A G T C A C G T A C T G C T G A A G T C A C G T C G A T A T G C A C G T A C G T
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:7
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GACCTBACTTCTT
TGACCTARTT----
 A C G T A T C G C G T A A G T C A G T C A C G T A C T G C T G A A G T C A C G T C G A T A T G C A C G T A C G T
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T A C G T A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:8
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GACCTBACTTCTT----
TACGAGACTCCTCTAAC
 A T C G C G T A A G T C A G T C A C G T A C T G C T G A A G T C A C G T C G A T A T G C A C G T A C G T A C G T A C G T A C G T A C G T
C A G T C T G A A T G C A C T G C G T A C A T G C T G A A T G C A C G T A G T C T G A C A G C T G A T C C G A T T G C A G T C A T A G C

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GACCTBACTTCTT
TGACCYCT------
 A C G T A T C G C G T A A G T C A G T C A C G T A C T G C T G A A G T C A C G T C G A T A T G C A C G T A C G T
A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:10
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--GACCTBACTTCTT
TTGACCTANTTATN-
 A C G T A C G T A T C G C G T A A G T C A G T C A C G T A C T G C T G A A G T C A C G T C G A T A T G C A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A A C G T