Information for 4-ARGGAGATYCGCA (Motif 4)

C G T A C T A G C T A G A C T G C G T A A C T G C G T A A G C T A G C T A G T C A C T G A T G C C G T A
Reverse Opposite:
A C G T A T C G A G T C A C T G C T G A C T G A A C G T A G T C A C G T A G T C A G T C A G T C C G A T
p-value:1e-14
log p-value:-3.235e+01
Information Content per bp:1.909
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.3 +/- 30.4bp
Average Position of motif in Background55.9 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.61
Offset:2
Orientation:forward strand
Alignment:ARGGAGATYCGCA
--GGAAATTCCC-
 C G T A C T A G C T A G A C T G C G T A A C T G C G T A A G C T A G C T A G T C A C T G A T G C C G T A
A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:ARGGAGATYCGCA
--GGAAATTCCC-
 C G T A C T A G C T A G A C T G C G T A A C T G C G T A A G C T A G C T A G T C A C T G A T G C C G T A
A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:ARGGAGATYCGCA
--GGAAATCCCC-
 C G T A C T A G C T A G A C T G C G T A A C T G C G T A A G C T A G C T A G T C A C T G A T G C C G T A
A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:ARGGAGATYCGCA
-GGGAAATCCCCN
 C G T A C T A G C T A G A C T G C G T A A C T G C G T A A G C T A G C T A G T C A C T G A T G C C G T A
A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:ARGGAGATYCGCA
AAGGATATNTN--
 C G T A C T A G C T A G A C T G C G T A A C T G C G T A A G C T A G C T A G T C A C T G A T G C C G T A
T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T A C G T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:ARGGAGATYCGCA---
AGGGGGATTAGCTGCC
 C G T A C T A G C T A G A C T G C G T A A C T G C G T A A G C T A G C T A G T C A C T G A T G C C G T A A C G T A C G T A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

Crx/MA0467.1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:ARGGAGATYCGCA
AAGAGGATTAG--
 C G T A C T A G C T A G A C T G C G T A A C T G C G T A A G C T A G C T A G T C A C T G A T G C C G T A
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.52
Offset:1
Orientation:forward strand
Alignment:ARGGAGATYCGCA-
-AGGGGAATCCCCT
 C G T A C T A G C T A G A C T G C G T A A C T G C G T A A G C T A G C T A G T C A C T G A T G C C G T A A C G T
A C G T T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:9
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:ARGGAGATYCGCA-
--GGGGATTCCCCC
 C G T A C T A G C T A G A C T G C G T A A C T G C G T A A G C T A G C T A G T C A C T G A T G C C G T A A C G T
A C G T A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

PH0121.1_Obox1/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--ARGGAGATYCGCA--
TTAAGGGGATTAACTAC
 A C G T A C G T C G T A C T A G C T A G A C T G C G T A A C T G C G T A A G C T A G C T A G T C A C T G A T G C C G T A A C G T A C G T
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C