Information for 18-CWTGCATGCATGG (Motif 34)

A G T C C G T A C G A T A C T G A T G C C G T A A G C T T A C G G T A C C G T A A G C T C A T G C T A G
Reverse Opposite:
G A T C G A T C C T G A C G A T A C T G A T G C C T G A A C G T A T C G A G T C C G T A C G A T A C T G
p-value:1e-8
log p-value:-1.864e+01
Information Content per bp:1.751
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif10.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets37.0 +/- 24.8bp
Average Position of motif in Background49.2 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CWTGCATGCATGG
GTCATGCHTGRCTGS
 A C G T A C G T A G T C C G T A C G A T A C T G A T G C C G T A A G C T T A C G G T A C C G T A A G C T C A T G C T A G
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PB0028.1_Hbp1_1/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CWTGCATGCATGG-
ACTATGAATGAATGAT
 A C G T A C G T A G T C C G T A C G A T A C T G A T G C C G T A A G C T T A C G G T A C C G T A A G C T C A T G C T A G A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

PB0170.1_Sox17_2/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CWTGCATGCATGG----
NTTNTATGAATGTGNNC
 A G T C C G T A C G A T A C T G A T G C C G T A A G C T T A C G G T A C C G T A A G C T C A T G C T A G A C G T A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CWTGCATGCATGG
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T A G T C C G T A C G A T A C T G A T G C C G T A A G C T T A C G G T A C C G T A A G C T C A T G C T A G
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

PB0178.1_Sox8_2/Jaspar

Match Rank:5
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----CWTGCATGCATGG
NNTNTCATGAATGT----
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G A T A C T G A T G C C G T A A G C T T A C G G T A C C G T A A G C T C A T G C T A G
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T A C G T A C G T

PAX1/MA0779.1/Jaspar

Match Rank:6
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CWTGCATGCATGG-
CGTCACGCATGACTGCA
 A C G T A C G T A C G T A G T C C G T A C G A T A C T G A T G C C G T A A G C T T A C G G T A C C G T A A G C T C A T G C T A G A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

PAX9/MA0781.1/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CWTGCATGCATGG-
CGTCACGCATGACTGCA
 A C G T A C G T A C G T A G T C C G T A C G A T A C T G A T G C C G T A A G C T T A C G G T A C C G T A A G C T C A T G C T A G A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CWTGCATGCATGG
NNACTTGCCTT-----
 A C G T A C G T A C G T A G T C C G T A C G A T A C T G A T G C C G T A A G C T T A C G G T A C C G T A A G C T C A T G C T A G
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:9
Score:0.53
Offset:5
Orientation:forward strand
Alignment:CWTGCATGCATGG--
-----ATGMATATDC
 A G T C C G T A C G A T A C T G A T G C C G T A A G C T T A C G G T A C C G T A A G C T C A T G C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CWTGCATGCATGG
-TBGCACGCAA--
 A G T C C G T A C G A T A C T G A T G C C G T A A G C T T A C G G T A C C G T A A G C T C A T G C T A G
A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T