Information for 16-CGCACAGCAHVCAVGT (Motif 27)

G T A C C T A G A G T C G C T A A G T C G T C A A C T G A T G C C G T A G C T A T A C G A G T C C G T A T A G C A T C G C G A T
Reverse Opposite:
C G T A A T G C A C T G C G A T A C T G A G T C C A G T A C G T A T C G A G T C A C G T A C T G C G A T A C T G A G T C A C T G
p-value:1e-8
log p-value:-2.036e+01
Information Content per bp:1.761
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets71.8 +/- 11.2bp
Average Position of motif in Background87.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CGCACAGCAHVCAVGT
CCACACAGCAGGAGA--
 A C G T G T A C C T A G A G T C G C T A A G T C G T C A A C T G A T G C C G T A G C T A T A C G A G T C C G T A T A G C A T C G C G A T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CGCACAGCAHVCAVGT
GAGCACAGCAGGACA--
 A C G T G T A C C T A G A G T C G C T A A G T C G T C A A C T G A T G C C G T A G C T A T A C G A G T C C G T A T A G C A T C G C G A T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CGCACAGCAHVCAVGT
CCACACAGCAGGAGA--
 A C G T G T A C C T A G A G T C G C T A A G T C G T C A A C T G A T G C C G T A G C T A T A C G A G T C C G T A T A G C A T C G C G A T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CGCACAGCAHVCAVGT
-DCTCAGCAGG-----
 G T A C C T A G A G T C G C T A A G T C G T C A A C T G A T G C C G T A G C T A T A C G A G T C C G T A T A G C A T C G C G A T
A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CGCACAGCAHVCAVGT
AATCGCACTGCATTCCG--
 A C G T A C G T A C G T G T A C C T A G A G T C G C T A A G T C G T C A A C T G A T G C C G T A G C T A T A C G A G T C C G T A T A G C A T C G C G A T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CGCACAGCAHVCAVGT
--CACAGN--------
 G T A C C T A G A G T C G C T A A G T C G T C A A C T G A T G C C G T A G C T A T A C G A G T C C G T A T A G C A T C G C G A T
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CGCACAGCAHVCAVGT
--CACAGCAGGGGG--
 G T A C C T A G A G T C G C T A A G T C G T C A A C T G A T G C C G T A G C T A T A C G A G T C C G T A T A G C A T C G C G A T
A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:8
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CGCACAGCAHVCAVGT--
--AGCGGCACACACGCAA
 G T A C C T A G A G T C G C T A A G T C G T C A A C T G A T G C C G T A G C T A T A C G A G T C C G T A T A G C A T C G C G A T A C G T A C G T
A C G T A C G T C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CGCACAGCAHVCAVGT
CCGCATAGCAACGGA--
 A C G T G T A C C T A G A G T C G C T A A G T C G T C A A C T G A T G C C G T A G C T A T A C G A G T C C G T A T A G C A T C G C G A T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A A C G T A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CGCACAGCAHVCAVGT
NNNVCTGWGYAAACASN-
 A C G T A C G T G T A C C T A G A G T C G C T A A G T C G T C A A C T G A T G C C G T A G C T A T A C G A G T C C G T A T A G C A T C G C G A T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A A C G T