Information for 13-CGGSCCTCGGTGA (Motif 24)

A T G C C T A G A T C G T A G C G T A C A G T C A C G T A G T C T C A G A C T G C G A T T C A G C G T A
Reverse Opposite:
A C G T A G T C G C T A G T A C A G T C A C T G C G T A A C T G A C T G A T C G A T G C A G T C A T C G
p-value:1e-8
log p-value:-2.069e+01
Information Content per bp:1.749
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.85%
Number of Background Sequences with motif75.3
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets48.3 +/- 25.3bp
Average Position of motif in Background54.6 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CGGSCCTCGGTGA--
----GCTCGTAAAAA
 A T G C C T A G A T C G T A G C G T A C A G T C A C G T A G T C T C A G A C T G C G A T T C A G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CGGSCCTCGGTGA
-AGGCCTAG----
 A T G C C T A G A T C G T A G C G T A C A G T C A C G T A G T C T C A G A C T G C G A T T C A G C G T A
A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CGGSCCTCGGTGA
CNAGGCCT------
 A C G T A T G C C T A G A T C G T A G C G T A C A G T C A C G T A G T C T C A G A C T G C G A T T C A G C G T A
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CGGSCCTCGGTGA----
-AAACCTCGTAAAATTT
 A T G C C T A G A T C G T A G C G T A C A G T C A C G T A G T C T C A G A C T G C G A T T C A G C G T A A C G T A C G T A C G T A C G T
A C G T G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

PH0068.1_Hoxc13/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CGGSCCTCGGTGA----
-AAAGCTCGTAAAATTT
 A T G C C T A G A T C G T A G C G T A C A G T C A C G T A G T C T C A G A C T G C G A T T C A G C G T A A C G T A C G T A C G T A C G T
A C G T G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

Zfx/MA0146.2/Jaspar

Match Rank:6
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------CGGSCCTCGGTGA
GGGGCCGAGGCCTG-----
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C C T A G A T C G T A G C G T A C A G T C A C G T A G T C T C A G A C T G C G A T T C A G C G T A
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T A C G T A C G T A C G T

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:7
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CGGSCCTCGGTGA-----
NNNTGAACTCNNTGACCTCN
 A C G T A C G T A T G C C T A G A T C G T A G C G T A C A G T C A C G T A G T C T C A G A C T G C G A T T C A G C G T A A C G T A C G T A C G T A C G T A C G T
G T A C G A T C G T C A G C A T T C A G G T C A G T C A G T A C A G C T A G T C C G T A T A C G G C A T T A C G T G C A G T A C G A T C G A C T A G T C G A C T

PB0139.1_Irf5_2/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CGGSCCTCGGTGA-
NNAATTCTCGNTNAN
 A C G T A T G C C T A G A T C G T A G C G T A C A G T C A C G T A G T C T C A G A C T G C G A T T C A G C G T A A C G T
A T C G T A C G C T G A C T G A G A C T G A C T T A G C A G C T A G T C C A T G C T A G G C A T G A T C C G T A T C G A

PB0099.1_Zfp691_1/Jaspar

Match Rank:9
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----CGGSCCTCGGTGA
CGAACAGTGCTCACTAT
 A C G T A C G T A C G T A C G T A T G C C T A G A T C G T A G C G T A C A G T C A C G T A G T C T C A G A C T G C G A T T C A G C G T A
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

HOXC10/MA0905.1/Jaspar

Match Rank:10
Score:0.51
Offset:5
Orientation:forward strand
Alignment:CGGSCCTCGGTGA--
-----GTCGTAAAAT
 A T G C C T A G A T C G T A G C G T A C A G T C A C G T A G T C T C A G A C T G C G A T T C A G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T