Information for 11-GCTATTAAGG (Motif 22)

T A C G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A C G T C G T A G T C A G C A T C G T A A C T G A T G C
p-value:1e-9
log p-value:-2.094e+01
Information Content per bp:1.921
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.39%
Number of Background Sequences with motif31.9
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets52.4 +/- 22.8bp
Average Position of motif in Background51.5 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0135.1_Hoxa3_2/Jaspar

Match Rank:1
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----GCTATTAAGG
AAAAACCATTAAGG
 A C G T A C G T A C G T A C G T T A C G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A C T G A C T G
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

Hmx1/MA0896.1/Jaspar

Match Rank:2
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----GCTATTAAGG---
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T A C G T T A C G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A C T G A C T G A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:3
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----GCTATTAAGG---
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T A C G T T A C G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A C T G A C T G A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GCTATTAAGG-
GNCTATAAAAGG
 A C G T T A C G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A C T G A C T G A C G T
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

Barhl1/MA0877.1/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GCTATTAAGG
NNCAATTANN-
 A C G T T A C G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A C T G A C T G
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C A C G T

Nkx2-5/MA0063.1/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GCTATTAAGG
-CAATTAA--
 T A C G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A C T G A C T G
A C G T G T A C C G T A G T C A A C G T A C G T C T G A G C T A A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCTATTAAGG
NGCAATTAAA-
 A C G T T A C G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A C T G A C T G
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCTATTAAGG
GGCCATTAAC-
 A C G T T A C G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A C T G A C T G
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:9
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----GCTATTAAGG--
AGGACGCTGTAAAGGGA
 A C G T A C G T A C G T A C G T A C G T T A C G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A C T G A C T G A C G T A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

Hmx3/MA0898.1/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GCTATTAAGG---
ACAAGCAATTAAAGAAT
 A C G T A C G T A C G T A C G T T A C G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A C T G A C T G A C G T A C G T A C G T
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T