Information for 4-AACTCACTCTGAG (Motif 9)

C G T A G T C A A T G C C G A T A T G C T G C A A G T C C G A T T A G C C G A T A C T G C G T A A C T G
Reverse Opposite:
A G T C C G A T A G T C C G T A A T C G G C T A A C T G A C G T A T C G C G T A A T C G A C G T G A C T
p-value:1e-11
log p-value:-2.602e+01
Information Content per bp:1.799
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif14.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets63.3 +/- 23.0bp
Average Position of motif in Background46.1 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.59
Offset:4
Orientation:forward strand
Alignment:AACTCACTCTGAG-
----CCTGCTGAGH
 C G T A G T C A A T G C C G A T A T G C T G C A A G T C C G A T T A G C C G A T A C T G C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AACTCACTCTGAG---
-TCNCCTGCTGNGNNN
 C G T A G T C A A T G C C G A T A T G C T G C A A G T C C G A T T A G C C G A T A C T G C G T A A C T G A C G T A C G T A C G T
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AACTCACTCTGAG---
-NNTCCTGCTGTGNNN
 C G T A G T C A A T G C C G A T A T G C T G C A A G T C C G A T T A G C C G A T A C T G C G T A A C T G A C G T A C G T A C G T
A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AACTCACTCTGAG---
-TNTCCTGCTGTGNNG
 C G T A G T C A A T G C C G A T A T G C T G C A A G T C C G A T T A G C C G A T A C T G C G T A A C T G A C G T A C G T A C G T
A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

ZIC3/MA0697.1/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AACTCACTCTGAG-
GACCCCCCGCTGCGC
 A C G T C G T A G T C A A T G C C G A T A T G C T G C A A G T C C G A T T A G C C G A T A C T G C G T A A C T G A C G T
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AACTCACTCTGAG-
GGCCYCCTGCTGDGH
 A C G T C G T A G T C A A T G C C G A T A T G C T G C A A G T C C G A T T A G C C G A T A C T G C G T A A C T G A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0139.1_Irf5_2/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AACTCACTCTGAG
NNAATTCTCGNTNAN
 A C G T A C G T C G T A G T C A A T G C C G A T A T G C T G C A A G T C C G A T T A G C C G A T A C T G C G T A A C T G
A T C G T A C G C T G A C T G A G A C T G A C T T A G C A G C T A G T C C A T G C T A G G C A T G A T C C G T A T C G A

RARA::RXRA/MA0159.1/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AACTCACTCTGAG--
TGACCTCTCNNTGACCT
 A C G T A C G T C G T A G T C A A T G C C G A T A T G C T G C A A G T C C G A T T A G C C G A T A C T G C G T A A C T G A C G T A C G T
G A C T T A C G G T C A T G A C A G T C A C G T A T G C G A C T A G T C A T G C T C A G A G C T T A C G G T C A G T A C A G T C A G C T

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:9
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-AACTCACTCTGAG----
WNAGTCADAVTGAAACTN
 A C G T C G T A G T C A A T G C C G A T A T G C T G C A A G T C C G A T T A G C C G A T A C T G C G T A A C T G A C G T A C G T A C G T A C G T
G C A T T A C G C G T A A T C G G C A T T A G C G C T A C G T A G C T A T G C A C G A T T C A G C T G A T C G A T C G A T A G C G A C T T C A G

ZIC1/MA0696.1/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-AACTCACTCTGAG
GACCCCCCGCTGTG
 A C G T C G T A G T C A A T G C C G A T A T G C T G C A A G T C C G A T T A G C C G A T A C T G C G T A A C T G
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G