Information for 6-GCTTTATGAG (Motif 5)

T C A G G A T C A G C T C G A T A C G T T G C A C G A T C T A G C T G A T C A G
Reverse Opposite:
A G T C G A C T G A T C C G T A A C G T G T C A G C T A C T G A C T A G A G T C
p-value:1e-16
log p-value:-3.702e+01
Information Content per bp:1.679
Number of Target Sequences with motif79.0
Percentage of Target Sequences with motif9.73%
Number of Background Sequences with motif1603.0
Percentage of Background Sequences with motif3.34%
Average Position of motif in Targets52.2 +/- 26.4bp
Average Position of motif in Background48.8 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:1
Score:0.79
Offset:1
Orientation:forward strand
Alignment:GCTTTATGAG-
-TTTTATKRGG
 T C A G G A T C A G C T C G A T A C G T T G C A C G A T C T A G C T G A T C A G A C G T
A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:2
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-GCTTTATGAG-
DGWTTTATGRCN
 A C G T T C A G G A T C A G C T C G A T A C G T T G C A C G A T C T A G C T G A T C A G A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:GCTTTATGAG-
-TTTTATTRGN
 T C A G G A T C A G C T C G A T A C G T T G C A C G A T C T A G C T G A T C A G A C G T
A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

PH0068.1_Hoxc13/Jaspar

Match Rank:4
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--GCTTTATGAG----
NAATTTTACGAGNTNN
 A C G T A C G T T C A G G A T C A G C T C G A T A C G T T G C A C G A T C T A G C T G A T C A G A C G T A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GCTTTATGAG
NTTTTATTGG
 T C A G G A T C A G C T C G A T A C G T T G C A C G A T C T A G C T G A T C A G
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G

HOXA13/MA0650.1/Jaspar

Match Rank:6
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GCTTTATGAG
TTTTTATTGG
 T C A G G A T C A G C T C G A T A C G T T G C A C G A T C T A G C T G A T C A G
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GCTTTATGAG
-TTTTATTGC
 T C A G G A T C A G C T C G A T A C G T T G C A C G A T C T A G C T G A T C A G
A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GCTTTATGAG
NTTTTATGAC
 T C A G G A T C A G C T C G A T A C G T T G C A C G A T C T A G C T G A T C A G
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

HOXC13/MA0907.1/Jaspar

Match Rank:9
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GCTTTATGAG-
NTTTTACGAGN
 T C A G G A T C A G C T C G A T A C G T T G C A C G A T C T A G C T G A T C A G A C G T
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

PH0048.1_Hoxa13/Jaspar

Match Rank:10
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--GCTTTATGAG----
ANATTTTACGAGNNNN
 A C G T A C G T T C A G G A T C A G C T C G A T A C G T T G C A C G A T C T A G C T G A T C A G A C G T A C G T A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T