Information for 3-KGGTTGTAAA (Motif 4)

C A G T C T A G A T C G A C G T C G A T C T A G A G C T C G T A C G T A C G T A
Reverse Opposite:
A C G T C G A T A C G T C T G A A G T C C G T A T G C A T A G C A G T C G T C A
p-value:1e-21
log p-value:-4.930e+01
Information Content per bp:1.737
Number of Target Sequences with motif56.0
Percentage of Target Sequences with motif6.90%
Number of Background Sequences with motif662.2
Percentage of Background Sequences with motif1.38%
Average Position of motif in Targets45.9 +/- 27.4bp
Average Position of motif in Background51.0 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:1
Score:0.78
Offset:1
Orientation:forward strand
Alignment:KGGTTGTAAA---
-NGYCATAAAWCH
 C A G T C T A G A T C G A C G T C G A T C T A G A G C T C G T A C G T A C G T A A C G T A C G T A C G T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

HOXC12/MA0906.1/Jaspar

Match Rank:2
Score:0.73
Offset:1
Orientation:forward strand
Alignment:KGGTTGTAAA--
-GGTCGTAAAAA
 C A G T C T A G A T C G A C G T C G A T C T A G A G C T C G T A C G T A C G T A A C G T A C G T
A C G T C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A

PH0067.1_Hoxc12/Jaspar

Match Rank:3
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--KGGTTGTAAA-----
TTAGGTCGTAAAATTTC
 A C G T A C G T C A G T C T A G A T C G A C G T C G A T C T A G A G C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G A C T G C A T T C G A T C A G T C A G A G C T G T A C C T A G A C G T G C T A C G T A G C T A G C T A G C A T A G C T C G A T G A T C

HOXC11/MA0651.1/Jaspar

Match Rank:4
Score:0.71
Offset:1
Orientation:forward strand
Alignment:KGGTTGTAAA--
-GGTCGTAAAAT
 C A G T C T A G A T C G A C G T C G A T C T A G A G C T C G T A C G T A C G T A A C G T A C G T
A C G T C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T

Hoxa11/MA0911.1/Jaspar

Match Rank:5
Score:0.70
Offset:1
Orientation:forward strand
Alignment:KGGTTGTAAA---
-GGTCGTAAAATT
 C A G T C T A G A T C G A C G T C G A T C T A G A G C T C G T A C G T A C G T A A C G T A C G T A C G T
A C G T C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

PH0077.1_Hoxd12/Jaspar

Match Rank:6
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--KGGTTGTAAA-----
CAAGGTCGTAAAATCTT
 A C G T A C G T C A G T C T A G A T C G A C G T C G A T C T A G A G C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T

POL012.1_TATA-Box/Jaspar

Match Rank:7
Score:0.70
Offset:3
Orientation:forward strand
Alignment:KGGTTGTAAA--------
---GTATAAAAGGCGGGG
 C A G T C T A G A T C G A C G T C G A T C T A G A G C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:8
Score:0.70
Offset:3
Orientation:forward strand
Alignment:KGGTTGTAAA--------
---GTATAAAAGGCGGGG
 C A G T C T A G A T C G A C G T C G A T C T A G A G C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

HOXD12/MA0873.1/Jaspar

Match Rank:9
Score:0.70
Offset:1
Orientation:forward strand
Alignment:KGGTTGTAAA--
-AGTCGTAAAAA
 C A G T C T A G A T C G A C G T C G A T C T A G A G C T C G T A C G T A C G T A A C G T A C G T
A C G T T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

HOXD11/MA0908.1/Jaspar

Match Rank:10
Score:0.69
Offset:2
Orientation:forward strand
Alignment:KGGTTGTAAA--
--GTCGTAAAAA
 C A G T C T A G A T C G A C G T C G A T C T A G A G C T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A