Information for 6-AGGGACAATAAAA (Motif 11)

G C T A C T A G A C T G T A C G C T G A T G A C C G T A C G T A A G C T C G T A C T G A C G T A T C G A
Reverse Opposite:
A C G T C G A T A G C T G A C T C T G A C G A T C G A T A C T G A G C T A T G C T A G C A G T C C G A T
p-value:1e-11
log p-value:-2.550e+01
Information Content per bp:1.755
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.97%
Number of Background Sequences with motif90.7
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets50.6 +/- 27.6bp
Average Position of motif in Background47.5 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0075.1_Hoxd10/Jaspar

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:AGGGACAATAAAA-----
-AATGCAATAAAATTTAT
 G C T A C T A G A C T G T A C G C T G A T G A C C G T A C G T A A G C T C G T A C T G A C G T A T C G A A C G T A C G T A C G T A C G T A C G T
A C G T T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

HOXA13/MA0650.1/Jaspar

Match Rank:2
Score:0.72
Offset:4
Orientation:forward strand
Alignment:AGGGACAATAAAA-
----CCAATAAAAA
 G C T A C T A G A C T G T A C G C T G A T G A C C G T A C G T A A G C T C G T A C T G A C G T A T C G A A C G T
A C G T A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

HOXB13/MA0901.1/Jaspar

Match Rank:3
Score:0.71
Offset:4
Orientation:forward strand
Alignment:AGGGACAATAAAA-
----CCAATAAAAC
 G C T A C T A G A C T G T A C G C T G A T G A C C G T A C G T A A G C T C G T A C T G A C G T A T C G A A C G T
A C G T A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

PB0072.1_Sox5_1/Jaspar

Match Rank:4
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AGGGACAATAAAA-
TTTAGAACAATAAAAT
 A C G T A C G T G C T A C T A G A C T G T A C G C T G A T G A C C G T A C G T A A G C T C G T A C T G A C G T A T C G A A C G T
C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

CDX1/MA0878.1/Jaspar

Match Rank:5
Score:0.71
Offset:4
Orientation:forward strand
Alignment:AGGGACAATAAAA
----GCAATAAAA
 G C T A C T A G A C T G T A C G C T G A T G A C C G T A C G T A A G C T C G T A C T G A C G T A T C G A
A C G T A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

PH0013.1_Cdx2/Jaspar

Match Rank:6
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGGGACAATAAAA---
AAAGGTAATAAAATTT
 G C T A C T A G A C T G T A C G C T G A T G A C C G T A C G T A A G C T C G T A C T G A C G T A T C G A A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

Hoxd9/MA0913.1/Jaspar

Match Rank:7
Score:0.70
Offset:4
Orientation:forward strand
Alignment:AGGGACAATAAAA-
----GCAATAAAAA
 G C T A C T A G A C T G T A C G C T G A T G A C C G T A C G T A A G C T C G T A C T G A C G T A T C G A A C G T
A C G T A C G T A C G T A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.69
Offset:4
Orientation:forward strand
Alignment:AGGGACAATAAAA-
----CCAATAAAAA
 G C T A C T A G A C T G T A C G C T G A T G A C C G T A C G T A A G C T C G T A C T G A C G T A T C G A A C G T
A C G T A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXA10/MA0899.1/Jaspar

Match Rank:9
Score:0.69
Offset:3
Orientation:forward strand
Alignment:AGGGACAATAAAA-
---GGTAATAAAAA
 G C T A C T A G A C T G T A C G C T G A T G A C C G T A C G T A A G C T C G T A C T G A C G T A T C G A A C G T
A C G T A C G T A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.69
Offset:2
Orientation:forward strand
Alignment:AGGGACAATAAAA
--AAGCCATAAAA
 G C T A C T A G A C T G T A C G C T G A T G A C C G T A C G T A A G C T C G T A C T G A C G T A T C G A
A C G T A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A