Information for 6-GGCGCCATTA (Motif 8)

C T A G A T C G T A G C C A T G A T G C G A T C G C T A A C G T G A C T C G T A
Reverse Opposite:
G C A T C T G A T G C A C G A T C T A G T A C G G T A C A T C G T A G C G A T C
p-value:1e-11
log p-value:-2.594e+01
Information Content per bp:1.666
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif5.25%
Number of Background Sequences with motif743.4
Percentage of Background Sequences with motif1.59%
Average Position of motif in Targets50.0 +/- 27.8bp
Average Position of motif in Background50.7 +/- 31.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0113.1_E2F3_2/Jaspar

Match Rank:1
Score:0.75
Offset:-5
Orientation:forward strand
Alignment:-----GGCGCCATTA--
AGCTCGGCGCCAAAAGC
 A C G T A C G T A C G T A C G T A C G T C T A G A T C G T A G C C A T G A T G C G A T C G C T A A C G T G A C T C G T A A C G T A C G T
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

E2F1/MA0024.3/Jaspar

Match Rank:2
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---GGCGCCATTA
TTTGGCGCCAAA-
 A C G T A C G T A C G T C T A G A T C G T A G C C A T G A T G C G A T C G C T A A C G T G A C T C G T A
G C A T C G A T C A G T T C A G A T C G A T G C C T A G A T G C A T G C G C T A G C T A C G T A A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:3
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----GGCGCCATTA--
CCTTCGGCGCCAAAAGG
 A C G T A C G T A C G T A C G T A C G T C T A G A T C G T A G C C A T G A T G C G A T C G C T A A C G T G A C T C G T A A C G T A C G T
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

YY2/MA0748.1/Jaspar

Match Rank:4
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GGCGCCATTA
GTCCGCCATTA
 A C G T C T A G A T C G T A G C C A T G A T G C G A T C G C T A A C G T G A C T C G T A
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A

E2F3/MA0469.2/Jaspar

Match Rank:5
Score:0.71
Offset:-6
Orientation:reverse strand
Alignment:------GGCGCCATTA--
AAAAATGGCGCCATTTTT
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A T C G T A G C C A T G A T G C G A T C G C T A A C G T G A C T C G T A A C G T A C G T
T C G A T C G A C G T A G C T A C G T A C A G T A T C G A C T G A T G C A C T G A T G C T A G C G T C A G C A T C G A T G C A T A G C T G A C T

E2F2/MA0864.1/Jaspar

Match Rank:6
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----GGCGCCATTA-
AAAATGGCGCCATTTT
 A C G T A C G T A C G T A C G T A C G T C T A G A T C G T A G C C A T G A T G C G A T C G C T A A C G T G A C T C G T A A C G T
C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C T A G C G C T A G C A T C G A T C G A T C G A T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:GGCGCCATTA-
---BCMATTAG
 C T A G A T C G T A G C C A T G A T G C G A T C G C T A A C G T G A C T C G T A A C G T
A C G T A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G

BARX1/MA0875.1/Jaspar

Match Rank:8
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GGCGCCATTA-
---GCAATTAG
 C T A G A T C G T A G C C A T G A T G C G A T C G C T A A C G T G A C T C G T A A C G T
A C G T A C G T A C G T T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GGCGCCATTA--
--GGCCATTAAC
 C T A G A T C G T A G C C A T G A T G C G A T C G C T A A C G T G A C T C G T A A C G T A C G T
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:10
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:GGCGCCATTA--
----YCATTAMC
 C T A G A T C G T A G C C A T G A T G C G A T C G C T A A C G T G A C T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C