Information for 5-GGTCAAAGTC (Motif 5)

A C T G A T C G G A C T A G T C G T C A C G T A C T G A A C T G C G A T A G T C
Reverse Opposite:
C T A G C G T A A G T C A G C T A C G T A C G T A C T G C T G A T A G C G T A C
p-value:1e-13
log p-value:-3.127e+01
Information Content per bp:1.861
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.01%
Number of Background Sequences with motif70.5
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets50.0 +/- 24.6bp
Average Position of motif in Background46.1 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf4a/MA0114.3/Jaspar

Match Rank:1
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--GGTCAAAGTC----
GGGGTCAAAGTCCAAT
 A C G T A C G T A C T G A T C G G A C T A G T C G T C A C G T A C T G A A C T G C G A T A G T C A C G T A C G T A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-GGTCAAAGTC-
AGGTCAAGGTCA
 A C G T A C T G A T C G G A C T A G T C G T C A C G T A C T G A A C T G C G A T A G T C A C G T
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

HNF4G/MA0484.1/Jaspar

Match Rank:3
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---GGTCAAAGTC--
AGAGTCCAAAGTCCA
 A C G T A C G T A C G T A C T G A T C G G A C T A G T C G T C A C G T A C T G A A C T G C G A T A G T C A C G T A C G T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-GGTCAAAGTC-
AGGTCAAGGTCA
 A C G T A C T G A T C G G A C T A G T C G T C A C G T A C T G A A C T G C G A T A G T C A C G T
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:5
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----GGTCAAAGTC--
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C G T A C T G A T C G G A C T A G T C G T C A C G T A C T G A A C T G C G A T A G T C A C G T A C G T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

Nr5a2/MA0505.1/Jaspar

Match Rank:6
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GGTCAAAGTC---
AAGTTCAAGGTCAGC
 A C G T A C G T A C T G A T C G G A C T A G T C G T C A C G T A C T G A A C T G C G A T A G T C A C G T A C G T A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

ESRRB/MA0141.3/Jaspar

Match Rank:7
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GGTCAAAGTC---
--TCAAGGTCATA
 A C T G A T C G G A C T A G T C G T C A C G T A C T G A A C T G C G A T A G T C A C G T A C G T A C G T
A C G T A C G T G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:8
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GGTCAAAGTC-
-BTCAAGGTCA
 A C T G A T C G G A C T A G T C G T C A C G T A C T G A A C T G C G A T A G T C A C G T
A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:9
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GGTCAAAGTC-
-NTCAAGGTCA
 A C T G A T C G G A C T A G T C G T C A C G T A C T G A A C T G C G A T A G T C A C G T
A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:10
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GGTCAAAGTC------
GGCAAAAGTCCAATAA
 A C T G A T C G G A C T A G T C G T C A C G T A C T G A A C T G C G A T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T