Information for 2-CYYGGTTACC (Motif 3)

T A G C G A C T G A C T A C T G A T C G G A C T C G A T C G T A G A T C A G T C
Reverse Opposite:
A C T G C T A G G C A T G C T A C T G A A T G C G T A C C T G A C T G A A T C G
p-value:1e-27
log p-value:-6.387e+01
Information Content per bp:1.599
Number of Target Sequences with motif91.0
Percentage of Target Sequences with motif22.30%
Number of Background Sequences with motif2647.7
Percentage of Background Sequences with motif5.84%
Average Position of motif in Targets51.8 +/- 24.0bp
Average Position of motif in Background49.4 +/- 33.2bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0159.1_Rfx4_2/Jaspar

Match Rank:1
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---CYYGGTTACC--
TACCCTAGTTACCGA
 A C G T A C G T A C G T T A G C G A C T G A C T A C T G A T C G G A C T C G A T C G T A G A T C A G T C A C G T A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

PB0158.1_Rfx3_2/Jaspar

Match Rank:2
Score:0.71
Offset:-7
Orientation:forward strand
Alignment:-------CYYGGTTACC------
ACTGACCCTTGGTTACCACAAAG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A C T G A C T A C T G A T C G G A C T C G A T C G T A G A T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CYYGGTTACC----
CTACTTGGATACGGAAT
 A C G T A C G T A C G T T A G C G A C T G A C T A C T G A T C G G A C T C G A T C G T A G A T C A G T C A C G T A C G T A C G T A C G T
A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T

HMBOX1/MA0895.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CYYGGTTACC
ACTAGTTAAC
 T A G C G A C T G A C T A C T G A T C G G A C T C G A T C G T A G A T C A G T C
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

PB0109.1_Bbx_2/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CYYGGTTACC------
TGATTGTTAACAGTTGG
 A C G T T A G C G A C T G A C T A C T G A T C G G A C T C G A T C G T A G A T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G A C T T C A G G C T A G A C T A C G T C A T G C A G T A G C T T C G A G T C A G T A C T C G A A T C G G C A T A C G T C T A G T C A G

ESR2/MA0258.2/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CYYGGTTACC-
AGGNCANNGTGACCT
 A C G T A C G T A C G T A C G T T A G C G A C T G A C T A C T G A T C G G A C T C G A T C G T A G A T C A G T C A C G T
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T

NR4A2/MA0160.1/Jaspar

Match Rank:7
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CYYGGTTACC--
----GTGACCTT
 T A G C G A C T G A C T A C T G A T C G G A C T C G A T C G T A G A T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CYYGGTTACC-------
---GGTTGCCATGGCAA
 T A G C G A C T G A C T A C T G A T C G G A C T C G A T C G T A G A T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:CYYGGTTACC-
-----TGACCT
 T A G C G A C T G A C T A C T G A T C G G A C T C G A T C G T A G A T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

PB0081.1_Tcf1_1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CYYGGTTACC-----
NNNTTAGTTAACTNANN
 A C G T A C G T T A G C G A C T G A C T A C T G A T C G G A C T C G A T C G T A G A T C A G T C A C G T A C G T A C G T A C G T A C G T
G A C T C A G T G A C T A G C T G A C T C T G A T A C G G A C T C G A T C G T A C G T A A G T C A G C T C T G A T C G A C T A G A C G T