Information for 9-ATAAAAGCCTATTATA (Motif 17)

C T G A A C G T C G T A C G T A C G T A C G T A A C T G A G T C G T A C C G A T C T G A C G A T A G C T C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A A C G T C T G A C G T A A G C T C G T A A C T G C T A G A G T C A C G T A C G T A C G T A C G T C G T A A G C T
p-value:1e-7
log p-value:-1.766e+01
Information Content per bp:1.919
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.2 +/- 24.3bp
Average Position of motif in Background58.4 +/- 14.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----ATAAAAGCCTATTATA
NCYAATAAAA----------
 A C G T A C G T A C G T A C G T C T G A A C G T C G T A C G T A C G T A C G T A A C T G A G T C G T A C C G A T C T G A C G A T A G C T C G T A A C G T C G T A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:2
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------ATAAAAGCCTATTATA
CTACCAATAAAATTCT------
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C G T C G T A C G T A C G T A C G T A A C T G A G T C G T A C C G A T C T G A C G A T A G C T C G T A A C G T C G T A
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:3
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---ATAAAAGCCTATTATA
GCAATAAAA----------
 A C G T A C G T A C G T C T G A A C G T C G T A C G T A C G T A C G T A A C T G A G T C G T A C C G A T C T G A C G A T A G C T C G T A A C G T C G T A
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:4
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----ATAAAAGCCTATTATA
GNCTATAAAAGG--------
 A C G T A C G T A C G T A C G T C T G A A C G T C G T A C G T A C G T A C G T A A C T G A G T C G T A C C G A T C T G A C G A T A G C T C G T A A C G T C G T A
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:5
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----ATAAAAGCCTATTATA
AAGCCATAAAA----------
 A C G T A C G T A C G T A C G T A C G T C T G A A C G T C G T A C G T A C G T A C G T A A C T G A G T C G T A C C G A T C T G A C G A T A G C T C G T A A C G T C G T A
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---ATAAAAGCCTATTATA
CCAATAAAAA---------
 A C G T A C G T A C G T C T G A A C G T C G T A C G T A C G T A C G T A A C T G A G T C G T A C C G A T C T G A C G A T A G C T C G T A A C G T C G T A
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:7
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----ATAAAAGCCTATTATA
CCYMATAAAA----------
 A C G T A C G T A C G T A C G T C T G A A C G T C G T A C G T A C G T A C G T A A C T G A G T C G T A C C G A T C T G A C G A T A G C T C G T A A C G T C G T A
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---ATAAAAGCCTATTATA
GTCATAAAAN---------
 A C G T A C G T A C G T C T G A A C G T C G T A C G T A C G T A C G T A A C T G A G T C G T A C C G A T C T G A C G A T A G C T C G T A A C G T C G T A
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--ATAAAAGCCTATTATA
GTATAAAAGGCGGGG---
 A C G T A C G T C T G A A C G T C G T A C G T A C G T A C G T A A C T G A G T C G T A C C G A T C T G A C G A T A G C T C G T A A C G T C G T A
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G A C G T A C G T A C G T

TBP/MA0108.2/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--ATAAAAGCCTATTATA
GTATAAAAGGCGGGG---
 A C G T A C G T C T G A A C G T C G T A C G T A C G T A C G T A A C T G A G T C G T A C C G A T C T G A C G A T A G C T C G T A A C G T C G T A
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G A C G T A C G T A C G T